About   Help   FAQ
Gdpd2 Gene Detail
Summary
  • Symbol
    Gdpd2
  • Name
    glycerophosphodiester phosphodiesterase domain containing 2
  • Synonyms
    9130017L10Rik, GDE3
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918834
    NCBI Gene: 71584
Location & Maps
more
  • Sequence Map
    ChrX:100729873-100738895 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      9023 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome X, 43.72 cM, cytoband C2
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    GDPD2, glycerophosphodiester phosphodiesterase domain containing 2
  • Vertebrate Orthologs
    10
  • Human Ortholog
    GDPD2, glycerophosphodiester phosphodiesterase domain containing 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    GDE3, OBDPF
  • Links
    NCBI Gene ID: 54857
    neXtProt AC: NX_Q9HCC8

  • Chr Location
    Xq13.1; chrX:70423031-70433391 (+)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 9792
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: GDPD2
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    5
  • Targeted
    5
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000018299 VEGA Gene Model | MGI Sequence Detail 9023 C57BL/6J ±  kb
transcript OTTMUST00000044210 VEGA | MGI Sequence Detail 2495 Not Applicable  
polypeptide OTTMUSP00000019876 VEGA | MGI Sequence Detail 539 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    42 from dbSNP Build 142
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000007929 glycerophosphodiester phosphodiesterase domain-containing protein 2
  • EC
  • InterPro Domains
    IPR030395 Glycerophosphodiester phosphodiesterase domain
    IPR004129 Glycerophosphoryl diester phosphodiesterase
    IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain
Molecular
Reagents
less
  • All nucleic 14
    cDNA 14

    Microarray probesets 3
References
more
  • Summaries
    All 27
    Gene Ontology 4
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:219311 Corda D, et al., The emerging physiological roles of the glycerophosphodiesterase family. FEBS J. 2014 Feb;281(4):998-1016

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/29/2016
MGI 6.06
The Jackson Laboratory