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9030622O22Rik Gene Detail
Summary
  • Symbol
    9030622O22Rik
  • Name
    RIKEN cDNA 9030622O22 gene
  • Synonyms
    Alien, Falcor
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1918820
    NCBI Gene: 100043820
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:147786386-147882176 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 73.22 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    859 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918820
 lncRNA gene Chr2:147786379-147882433 (-)
129S1/SvImJ MGP_129S1SvImJ_G0006035
 lincRNA gene Chr2:152254879-152355671 (-)
A/J MGP_AJ_G0006028
 lincRNA gene Chr2:146065353-146163954 (-)
AKR/J MGP_AKRJ_G0006002
 lincRNA gene Chr2:150296886-150397534 (-)
BALB/cJ MGP_BALBcJ_G0006005
 lincRNA gene Chr2:146488493-146588820 (-)
C3H/HeJ MGP_C3HHeJ_G0005954
 lincRNA gene Chr2:150778358-150885777 (-)
C57BL/6NJ MGP_C57BL6NJ_G0006166
 lincRNA gene Chr2:156699184-156806850 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0005494
 lincRNA gene Chr2:140087915-140185316 (-)
CAST/EiJ MGP_CASTEiJ_G0005889
 lincRNA gene Chr2:151143276-151254050 (-)
CBA/J MGP_CBAJ_G0005938
 lincRNA gene Chr2:162441855-162556580 (-)
DBA/2J MGP_DBA2J_G0005959
 lincRNA gene Chr2:145326184-145425054 (-)
FVB/NJ MGP_FVBNJ_G0005984
 lincRNA gene Chr2:143836652-143932558 (-)
LP/J MGP_LPJ_G0006040
 lincRNA gene Chr2:152384647-152485024 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0005971
 lincRNA gene Chr2:166515695-166617338 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0006165
 lincRNA gene Chr2:150283248-150383551 (-)
PWK/PhJ MGP_PWKPhJ_G0005837
 lincRNA gene Chr2:145013929-145116304 (-)
SPRET/EiJ MGP_SPRETEiJ_G0005747
 lincRNA gene Chr2:149263941-149368151 (-)
WSB/EiJ MGP_WSBEiJ_G0005941
 lincRNA gene Chr2:151225932-151332775 (-)



Homology
more
  • Human Ortholog
    LINC00261, long intergenic non-protein coding RNA 261
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LINC00261, long intergenic non-protein coding RNA 261
  • Synonyms
    ALIEN, C20orf56, DEANR1, FALCOR, HCCDR1, LCAL62, NCRNA00261, onco-lncRNA-17, TCONS_00027846
  • Links
    NCBI Gene ID: 140828

  • Chr Location
    20p11.21; chr20:22547663-22578642 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    2 phenotypes from multigenic genotypes
    4 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a null allele exhibit peribronchial inflammation and globlet cell metaplasia by 1 year of age and show defects in regeneration of the airway epithelium after injury.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    752
  • Tissues
    38
  • cDNA Data
    4
  • Literature Summary
    4
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    • All Sequences
      60
    • RefSeq
      9
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000086141 Ensembl Gene Model | MGI Sequence Detail 95791 C57BL/6J ±  kb
    transcript ENSMUST00000247063 Ensembl | MGI Sequence Detail 2198 Not Applicable  
    For the selected sequence
    Molecular
    Reagents
    less
    • All nucleic 6
      cDNA 4
      Primer pair 2

      Microarray probesets 1
    References
    more
    • Summaries
      All 17
      Developmental Gene Expression 4
      Phenotypes 4
    • Earliest
      J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
    • Latest
      J:284174 Swarr DT, et al., The long noncoding RNA Falcor regulates Foxa2 expression to maintain lung epithelial homeostasis and promote regeneration. Genes Dev. 2019 Jun 1;33(11-12):656-668
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/16/2024
    MGI 6.23     		The Jackson Laboratory