Bcor
Gene Detail

Symbol Name ID

Bcor BCL6 interacting corepressor MGI:1918708

Synonyms

5830466J11Rik, 8430401K06Rik, D930024N20Rik, mKIAA1575

Feature Type

protein coding gene

Genetic Map

Chromosome X

6.83 cM, cytoband A1.2
Detailed Genetic Map ± 1 cM


Mapping data(2)

Sequence Map

ChrX:12036740-12160355 bp, - strand From VEGA annotation of GRCm38   123616 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:9809  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Bcor

Human homologs

Human Homolog		BCOR, BCL6 corepressor
NCBI Gene ID		54880
neXtProt AC		NX_Q6W2J9
Human Synonyms		ANOP2, MAA2, MCOPS2
Human Chr (Location)		Xp11.4; chrX:39910499-40036582 (-)  GRCh37.p10
Disease Associations		(2) Diseases Associated with Human BCOR

Alleles and phenotypes

All alleles(31) : Targeted(5) Gene trapped(26)
Phenotype Images(24)

Gene Ontology (GO) classifications

All GO classifications: (26 annotations)

Process	chromatin modification, heart development, ...
Component	nucleus, PcG protein complex
Function	heat shock protein binding, histone deacetylase binding, ...

This is a GO Consortium Reference Genome Project gene.
External Resources: FuncBase

Expression

Literature Summary: (3 records)
Data Summary: Results (242)    Tissues (101)    Images (53)
Theiler Stages: 11, 13, 14, 15, 19, 20, 21, 22, 23, 24, 25, 26, 28

Assay Type	Results
RNA in situ	150
Northern blot	4
RT-PCR	88

cDNA source data(107)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(113) cDNA(108) Primer pair(5)
Microarray probesets(5)

Other database links

VEGA Gene Model	OTTMUSG00000016940 (Evidence)
Ensembl Gene Model	ENSMUSG00000040363 (Evidence)
Entrez Gene	71458 (Evidence)
UniGene	196328
DFCI	TC1576378, TC1590514, TC1592974
DoTS	DT.101737539, DT.103566839, DT.60103667, DT.99854034, DT.99854036
NIA Mouse Gene Index	U039264
Consensus CDS Project	CCDS30021.1, CCDS30022.1, CCDS40872.1, CCDS40873.1
International Mouse Knockout Project Status	Bcor

Sequences

Length	Strain/Species
genomic	OTTMUSG00000016940	VEGA Gene Model | MGI Sequence Detail	123616	C57BL/6J
transcript	OTTMUST00000041082	VEGA | MGI Sequence Detail	6941	Not Applicable
polypeptide	OTTMUSP00000018407	VEGA | MGI Sequence Detail	1759	Not Applicable

All sequences(69) RefSeq(10) UniProt(4)

Polymorphisms

SNPs(112 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR002110	Ankyrin repeat
InterPro	IPR020683	Ankyrin repeat-containing domain
Protein Ontology	PR:000004709	BCL-6 corepressor

References

(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(41)

Other accession IDs

MGI:1923325, MGI:2444213