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Tmem80 Gene Detail
Summary
  • Symbol
    Tmem80
  • Name
    transmembrane protein 80
  • Synonyms
    5530601I19Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918698
    NCBI Gene: 71448
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:140908046-140917069 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 86.65 cM, cytoband F5
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    8 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918698
 protein coding gene Chr7:140907652-140917069 (+)
129S1/SvImJ MGP_129S1SvImJ_G0033224
 protein coding gene Chr7:146511493-146521702 (+)
A/J MGP_AJ_G0033206
 protein coding gene Chr7:142320950-142330358 (+)
AKR/J MGP_AKRJ_G0033138
 protein coding gene Chr7:146250004-146259505 (+)
BALB/cJ MGP_BALBcJ_G0033207
 protein coding gene Chr7:142066027-142075447 (+)
C3H/HeJ MGP_C3HHeJ_G0032921
 protein coding gene Chr7:146009164-146018572 (+)
C57BL/6NJ MGP_C57BL6NJ_G0033718
 protein coding gene Chr7:151863032-151874468 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0030691
 protein coding gene Chr7:143534577-143544338 (+)
CAST/EiJ MGP_CASTEiJ_G0032251
 protein coding gene Chr7:138307218-138320686 (+)
CBA/J MGP_CBAJ_G0032893
 protein coding gene Chr7:156995157-157004561 (+)
DBA/2J MGP_DBA2J_G0033045
 protein coding gene Chr7:140268267-140277685 (+)
FVB/NJ MGP_FVBNJ_G0032998
 protein coding gene Chr7:140182162-140191573 (+)
LP/J MGP_LPJ_G0033140
 protein coding gene Chr7:148007459-148016867 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033031
 protein coding gene Chr7:157654825-157664249 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0033738
 protein coding gene Chr7:145223218-145233785 (+)
PWK/PhJ MGP_PWKPhJ_G0031955
 protein coding gene Chr7:133549295-133558919 (+)
SPRET/EiJ MGP_SPRETEiJ_G0031802
 protein coding gene Chr7:132046719-132056578 (+)
WSB/EiJ MGP_WSBEiJ_G0032362
 protein coding gene Chr7:146170040-146179582 (+)



Homology
more
  • Human Ortholog
    TMEM80, transmembrane protein 80
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TMEM80, transmembrane protein 80
  • Links
    NCBI Gene ID: 283232
    neXtProt AC: NX_Q96HE8
    UniProt: Q96HE8

  • Chr Location
    11p15.5; chr11:695591-705028 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    3
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    37
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 71448 NCBI Gene Model | MGI Sequence Detail 9024 C57BL/6J ±  kb
transcript NM_027797 RefSeq | MGI Sequence Detail 1866 C57BL/6  
polypeptide Q9D3H0 UniProt | EBI | MGI Sequence Detail 123 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR019184 Uncharacterised protein family, transmembrane-17
Molecular
Reagents
less
  • All nucleic 39
    Genomic 2
    cDNA 37

    Microarray probesets 4
References
more
  • Summaries
    All 32
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 8
  • Earliest
    J:65007 Cattanach BM, et al., Two imprinted gene mutations: three phenotypes. Hum Mol Genet. 2000 Sep 22;9(15):2263-73
  • Latest
    J:263646 Horiuchi K, et al., Impaired Spermatogenesis, Muscle, and Erythrocyte Function in U12 Intron Splicing-Defective Zrsr1 Mutant Mice. Cell Rep. 2018 Apr 3;23(1):143-155
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory