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5530601H04Rik Gene Detail
Summary
  • Symbol
    5530601H04Rik
  • Name
    RIKEN cDNA 5530601H04 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1918695
    NCBI Gene: 71445
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:105040854-105070124 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 46.82 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    69 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918695
lncRNA gene ChrX:105037197-105079609 (-)
129S1/SvImJ MGP_129S1SvImJ_G0015788
unclassified non-coding RNA gene ChrX:101789750-101834541 (-)
A/J MGP_AJ_G0015763
unclassified non-coding RNA gene ChrX:101604861-101646841 (-)
AKR/J MGP_AKRJ_G0015726
unclassified non-coding RNA gene ChrX:104814389-104856539 (-)
BALB/cJ MGP_BALBcJ_G0015724
unclassified non-coding RNA gene ChrX:100437615-100480005 (-)
C3H/HeJ MGP_C3HHeJ_G0015545
unclassified non-coding RNA gene ChrX:102240675-102284857 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016179
unclassified non-coding RNA gene ChrX:104716514-104760720 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013902
unclassified non-coding RNA gene ChrX:99159382-99199799 (-)
CAST/EiJ MGP_CASTEiJ_G0015101
unclassified non-coding RNA gene ChrX:86434945-86478179 (-)
CBA/J MGP_CBAJ_G0015524
unclassified non-coding RNA gene ChrX:108015845-108059749 (-)
DBA/2J MGP_DBA2J_G0015623
unclassified non-coding RNA gene ChrX:100900599-100942378 (-)
FVB/NJ MGP_FVBNJ_G0015628
unclassified non-coding RNA gene ChrX:100189738-100231874 (-)
LP/J MGP_LPJ_G0015705
unclassified non-coding RNA gene ChrX:102738905-102787168 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015651
unclassified non-coding RNA gene ChrX:112679981-112727254 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016224
unclassified non-coding RNA gene ChrX:101449410-101491342 (-)
PWK/PhJ MGP_PWKPhJ_G0014883
unclassified non-coding RNA gene ChrX:83970026-84012701 (-)
SPRET/EiJ MGP_SPRETEiJ_G0014669
unclassified non-coding RNA gene ChrX:87144679-87188798 (-)
WSB/EiJ MGP_WSBEiJ_G0015204
unclassified non-coding RNA gene ChrX:100149624-100192272 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 71445 NCBI Gene Model | MGI Sequence Detail 29271 C57BL/6J ±  kb
transcript NR_015467 RefSeq | MGI Sequence Detail 3732 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 35
    cDNA 35

    Microarray probesets 5
Other
Accession IDs
less
MGI:2147915
References
more
  • Summaries
    All 18
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
09/10/2019
MGI 6.14
The Jackson Laboratory