Flrt3
Gene Detail

Symbol Name ID

Flrt3 fibronectin leucine rich transmembrane protein 3 MGI:1918686

Synonyms

5530600M07Rik, C430047I10Rik, mKIAA1469

Feature Type

protein coding gene

Genetic Map

Chromosome 2

69.20 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)

Sequence Map

Chr2:140650914-140671469 bp, - strand From VEGA annotation of GRCm38   20556 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:8322  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Human homologs

Human Homolog		FLRT3, fibronectin leucine rich transmembrane protein 3
NCBI Gene ID		23767
neXtProt AC		NX_Q9NZU0
Human Synonyms		HH21
Human Chr (Location)		20p11; chr20:14304639-14318313 (-)  GRCh37.p13
Disease Associations		(1) Diseases Associated with Human FLRT3

Alleles and phenotypes

All alleles(11) : Targeted(9) Gene trapped(2)
 

Mice homozygous for a null allele exhibit embryonic lethality during organogenesis, abnormal embryonic tissue development, disrupted head formation, cardia bifida and abnormal ventral wall closure.

 

Gene Ontology (GO) classifications

All GO classifications: (7 annotations)

Process	axon guidance, negative chemotaxis
Component	extracellular space, integral component of membrane, ...
Function	chemorepellent activity, protein binding

External Resources: FuncBase

Expression

Literature Summary: (11 records)

Data Summary: Results (286)    Tissues (83)    Images (56)
Theiler Stages: 12, 13, 15, 17, 18, 19, 20, 22, 23, 28

Assay Type	Results
RNA in situ	276
Northern blot	10

cDNA source data(16)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(17) cDNA(16) Primer pair(1)
Microarray probesets(7)

Other database links

VEGA Gene Model	OTTMUSG00000015600 (Evidence)
Ensembl Gene Model	ENSMUSG00000079021 (Evidence), ENSMUSG00000051379 (Evidence)
Entrez Gene	71436 (Evidence)
DFCI	TC1575859, TC1605599, TC1637606, TC1741168
DoTS	DT.101289113, DT.101734965, DT.487765, DT.91334765
NIA Mouse Gene Index	U023422
Consensus CDS Project	CCDS16806.1
International Mouse Knockout Project Status	Flrt3

Sequences

Length	Strain/Species
genomic	OTTMUSG00000015600	VEGA Gene Model | MGI Sequence Detail	20556	C57BL/6J
transcript	OTTMUST00000037050	VEGA | MGI Sequence Detail	3977	Not Applicable
polypeptide	OTTMUSP00000016617	VEGA | MGI Sequence Detail	649	Not Applicable

All sequences(51) RefSeq(4) UniProt(3)

Polymorphisms

SNPs within 2kb(158 from dbSNP Build 137)

Protein-related information

Resource	ID	Description
InterPro	IPR000483	Cysteine-rich flanking region, C-terminal
InterPro	IPR003961	Fibronectin, type III
InterPro	IPR001611	Leucine-rich repeat
InterPro	IPR000372	Leucine-rich repeat-containing N-terminal
InterPro	IPR003591	Leucine-rich repeat, typical subtype
Protein Ontology	PR:000007562	leucine-rich repeat transmembrane protein FLRT3

References

(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:197638 van den Berghe V, et al., Directed migration of cortical interneurons depends on the cell-autonomous action of Sip1. Neuron. 2013 Jan 9;77(1):70-82
All references(45)

Other accession IDs

MGI:1924899