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5430416N02Rik Gene Detail
Summary
  • Symbol
    5430416N02Rik
  • Name
    RIKEN cDNA 5430416N02 gene
  • Synonyms
    Gm3514
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1918676
    NCBI Gene: 100503199
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:100420842-100429535 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 48.48 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    61 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918676
lncRNA gene Chr5:100420842-100429535 (-)
129S1/SvImJ MGP_129S1SvImJ_G0006718
lincRNA gene Chr5:101901656-101911910 (-)
A/J MGP_AJ_G0006712
lincRNA gene Chr5:98111044-98120564 (-)
AKR/J MGP_AKRJ_G0006682
lincRNA gene Chr5:101342947-101353376 (-)
BALB/cJ MGP_BALBcJ_G0006687
lincRNA gene Chr5:99140469-99150798 (-)
C3H/HeJ MGP_C3HHeJ_G0006633
lincRNA gene Chr5:101692881-101702446 (-)
C57BL/6NJ MGP_C57BL6NJ_G0006852
lincRNA gene Chr5:106134533-106144457 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0006109
lincRNA gene Chr5:93347534-93355371 (-)
CAST/EiJ MGP_CASTEiJ_G0006556
lincRNA gene Chr5:100342171-100355267 (-)
CBA/J MGP_CBAJ_G0006614
lincRNA gene Chr5:109819075-109827310 (-)
DBA/2J MGP_DBA2J_G0006635
lincRNA gene Chr5:98299848-98308553 (-)
FVB/NJ MGP_FVBNJ_G0006659
lincRNA gene Chr5:97105626-97113724 (-)
LP/J MGP_LPJ_G0006719
lincRNA gene Chr5:102517070-102527222 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0006643
lincRNA gene Chr5:114900640-114912762 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0006854
lincRNA gene Chr5:100823797-100834359 (-)
PWK/PhJ MGP_PWKPhJ_G0006495
lincRNA gene Chr5:96731950-96740790 (-)
SPRET/EiJ MGP_SPRETEiJ_G0006401
lincRNA gene Chr5:98486401-98495686 (-)
WSB/EiJ MGP_WSBEiJ_G0006607
lincRNA gene Chr5:101158170-101168619 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    3
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Spontaneous
    1
  • Genomic Mutations
    3 involving 5430416N02Rik
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 100503199 NCBI Gene Model | MGI Sequence Detail 8694 C57BL/6J ±  kb
transcript NR_034038 RefSeq | MGI Sequence Detail 626 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 24
    cDNA 24

    Microarray probesets 1
Other
Accession IDs
less
MGI:3781691
References
more
  • Summaries
    All 20
    Gene Ontology 1
    Phenotypes 6
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:223994 Zangrando J, et al., Identification of candidate long non-coding RNAs in response to myocardial infarction. BMC Genomics. 2014;15:460

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
09/10/2019
MGI 6.14
The Jackson Laboratory