About   Help   FAQ
Spaar Gene Detail
Summary
  • Symbol
    Spaar
  • Name
    small regulatory polypeptide of amino acid response
  • Synonyms
    5430416O09Rik
Location &
Maps
more
  • Sequence Map
    Chr4:43730034-43734534 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 23.05 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    98 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918656
lincRNA gene Chr4:43730034-43759462 (.)
129S1/SvImJ MGP_129S1SvImJ_G0006415
lincRNA gene Chr4:41869017-41873526 (+)
A/J MGP_AJ_G0006407
lincRNA gene Chr4:40373875-40378386 (+)
AKR/J MGP_AKRJ_G0006381
lincRNA gene Chr4:41292252-41296767 (+)
BALB/cJ MGP_BALBcJ_G0006381
lincRNA gene Chr4:40464446-40468957 (+)
C3H/HeJ MGP_C3HHeJ_G0006331
lincRNA gene Chr4:41924576-41929087 (+)
C57BL/6NJ MGP_C57BL6NJ_G0006547
lincRNA gene Chr4:43441815-43446313 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0005834
lincRNA gene Chr4:37819403-37823840 (+)
CAST/EiJ MGP_CASTEiJ_G0006265
lincRNA gene Chr4:41434763-41439306 (+)
CBA/J MGP_CBAJ_G0006314
lincRNA gene Chr4:44776701-44781215 (+)
DBA/2J MGP_DBA2J_G0006336
lincRNA gene Chr4:40285593-40290108 (+)
FVB/NJ MGP_FVBNJ_G0006358
lincRNA gene Chr4:39516584-39521099 (+)
LP/J MGP_LPJ_G0006417
lincRNA gene Chr4:41921617-41926115 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0006345
lincRNA gene Chr4:48006122-48010635 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0006551
lincRNA gene Chr4:41509507-41514011 (+)
PWK/PhJ MGP_PWKPhJ_G0006201
lincRNA gene Chr4:40321771-40326394 (+)
SPRET/EiJ MGP_SPRETEiJ_G0006114
lincRNA gene Chr4:41063255-41067716 (+)
WSB/EiJ MGP_WSBEiJ_G0006310
lincRNA gene Chr4:41395762-41400274 (+)



Homology
more
  • Human Ortholog
    SPAAR, small regulatory polypeptide of amino acid response
  • Human Ortholog
    SPAAR, small regulatory polypeptide of amino acid response
    Orthology source: HGNC
  • Synonyms
    LINC00961, SPAR
  • Links
    NCBI Gene ID: 158376
    neXtProt AC: NX_A0A1B0GVQ0
    UniProt: A0A1B0GVQ0

  • Chr Location
    9p13.3; chr9:35909483-35911620 (+)  GRCh38.p7

  • HCOP
    human homology predictions: SPAAR
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
  • UniGene
Representative SequencesLengthStrain/SpeciesFlank
genomic 71406 NCBI Gene Model | MGI Sequence Detail 4501 C57BL/6J ±  kb
transcript NM_001348108 RefSeq | MGI Sequence Detail 4086 C57BL/6  
polypeptide A0A1B0GSZ0 UniProt | EBI | MGI Sequence Detail 75 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
Molecular
Reagents
less
  • All nucleic 11
    cDNA 11

    Microarray probesets 3
Other
Accession IDs
less
MGI:2140311
References
more
  • Summaries
    All 20
    Developmental Gene Expression 2
    Gene Ontology 2
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:238474 Matsumoto A, et al., mTORC1 and muscle regeneration are regulated by the LINC00961-encoded SPAR polypeptide. Nature. 2017 Jan 12;541(7636):228-232

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/06/2018
MGI 6.13
The Jackson Laboratory