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5530400C23Rik Gene Detail
Summary
  • Symbol
    5530400C23Rik
  • Name
    RIKEN cDNA 5530400C23 gene
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918650
    NCBI Gene: 232426
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr6:133292216-133295790 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 64.03 cM, cytoband F3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    64 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918650
protein coding gene Chr6:133292216-133295792 (+)
129S1/SvImJ MGP_129S1SvImJ_G0031400
protein coding gene Chr6:137772561-137776136 (+)
A/J MGP_AJ_G0031376
protein coding gene Chr6:132103768-132107343 (+)
AKR/J MGP_AKRJ_G0031303
protein coding gene Chr6:136221507-136225080 (+)
BALB/cJ MGP_BALBcJ_G0031382
protein coding gene Chr6:131659392-131662966 (+)
C3H/HeJ MGP_C3HHeJ_G0031104
protein coding gene Chr6:136384867-136388441 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031842
protein coding gene Chr6:141235273-141238853 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028974
protein coding gene Chr6:130838138-130841691 (+)
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0031063
protein coding gene Chr6:146742210-146745791 (+)
DBA/2J MGP_DBA2J_G0031221
protein coding gene Chr6:131192266-131195842 (+)
FVB/NJ MGP_FVBNJ_G0031171
protein coding gene Chr6:130163111-130166686 (+)
LP/J MGP_LPJ_G0031305
protein coding gene Chr6:137643576-137647148 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0031211
protein coding gene Chr6:150614595-150616949 (+)
NZO/HlLtJ no annotation
PWK/PhJ MGP_PWKPhJ_G0030198
protein coding gene Chr6:129573218-129575518 (+)
SPRET/EiJ MGP_SPRETEiJ_G0030022
protein coding gene Chr6:134338172-134340479 (+)
WSB/EiJ MGP_WSBEiJ_G0030564
protein coding gene Chr6:136509999-136512351 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 232426 NCBI Gene Model | MGI Sequence Detail 3575 C57BL/6J ±  kb
transcript NM_027784 RefSeq | MGI Sequence Detail 647 C57BL/6  
polypeptide NP_082060 RefSeq | MGI Sequence Detail 173 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR026086 Proline-rich protein
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 2
References
more
  • Summaries
    All 14
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
08/13/2019
MGI 6.14
The Jackson Laboratory