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5530400C23Rik Gene Detail
Summary
  • Symbol
    5530400C23Rik
  • Name
    RIKEN cDNA 5530400C23 gene
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918650
    NCBI Gene: 232426
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr6:133269179-133272753 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 64.03 cM, cytoband F3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    64 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918650
 protein coding gene Chr6:133269179-133272755 (+)
129S1/SvImJ MGP_129S1SvImJ_G0031400
 protein coding gene Chr6:137772561-137776136 (+)
A/J MGP_AJ_G0031376
 protein coding gene Chr6:132103768-132107343 (+)
AKR/J MGP_AKRJ_G0031303
 protein coding gene Chr6:136221507-136225080 (+)
BALB/cJ MGP_BALBcJ_G0031382
 protein coding gene Chr6:131659392-131662966 (+)
C3H/HeJ MGP_C3HHeJ_G0031104
 protein coding gene Chr6:136384867-136388441 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031842
 protein coding gene Chr6:141235273-141238853 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028974
 protein coding gene Chr6:130838138-130841691 (+)
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0031063
 protein coding gene Chr6:146742210-146745791 (+)
DBA/2J MGP_DBA2J_G0031221
 protein coding gene Chr6:131192266-131195842 (+)
FVB/NJ MGP_FVBNJ_G0031171
 protein coding gene Chr6:130163111-130166686 (+)
LP/J MGP_LPJ_G0031305
 protein coding gene Chr6:137643576-137647148 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0031211
 protein coding gene Chr6:150614595-150616949 (+)
NZO/HlLtJ no annotation
PWK/PhJ MGP_PWKPhJ_G0030198
 protein coding gene Chr6:129573218-129575518 (+)
SPRET/EiJ MGP_SPRETEiJ_G0030022
 protein coding gene Chr6:134338172-134340479 (+)
WSB/EiJ MGP_WSBEiJ_G0030564
 protein coding gene Chr6:136509999-136512351 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 232426 NCBI Gene Model | MGI Sequence Detail 3575 C57BL/6J ±  kb
transcript NM_027784 RefSeq | MGI Sequence Detail 647 C57BL/6  
polypeptide NP_082060 RefSeq | MGI Sequence Detail 173 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR026086 Proline-rich protein
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 2
References
more
  • Summaries
    All 14
    Gene Ontology 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory