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5430427O19Rik Gene Detail
Summary
  • Symbol
    5430427O19Rik
  • Name
    RIKEN cDNA 5430427O19 gene
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918648
    NCBI Gene: 71398
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:85870354-85891499 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 39.39 cM, cytoband B
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    139 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918648
protein coding gene ChrX:85776968-85891499 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035890
protein coding gene ChrX:81957013-81977873 (+)
A/J MGP_AJ_G0035875
protein coding gene ChrX:82061074-82083061 (+)
AKR/J MGP_AKRJ_G0035793
protein coding gene ChrX:84243419-84266549 (+)
BALB/cJ MGP_BALBcJ_G0035856
protein coding gene ChrX:80786795-80810458 (+)
C3H/HeJ MGP_C3HHeJ_G0035566
protein coding gene ChrX:82253723-82275307 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036387
protein coding gene ChrX:84457134-84481355 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033218
protein coding gene ChrX:80935748-80958004 (+)
CAST/EiJ MGP_CASTEiJ_G0034855
protein coding gene ChrX:67217824-67238516 (+)
CBA/J MGP_CBAJ_G0035541
protein coding gene ChrX:86752497-86773372 (+)
DBA/2J MGP_DBA2J_G0035696
protein coding gene ChrX:81447344-81468552 (+)
FVB/NJ MGP_FVBNJ_G0035635
protein coding gene ChrX:80855600-80876716 (+)
LP/J MGP_LPJ_G0035785
protein coding gene ChrX:82755056-82777916 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035672
protein coding gene ChrX:90264944-90291608 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036414
protein coding gene ChrX:81663734-81687642 (+)
PWK/PhJ MGP_PWKPhJ_G0034553
protein coding gene ChrX:65241036-65262206 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034383
protein coding gene ChrX:68159284-68179617 (+)
WSB/EiJ MGP_WSBEiJ_G0034994
protein coding gene ChrX:80578229-80599098 (+)



Homology
more
  • Human Ortholog
    CXorf21, chromosome X open reading frame 21
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CXorf21, chromosome X open reading frame 21
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 80231
    neXtProt AC: NX_Q9HAI6
    UniProt: Q9HAI6

  • Chr Location
    Xp21.2; chrX:30558824-30577916 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000025058 Ensembl Gene Model | MGI Sequence Detail 21146 C57BL/6J ±  kb
transcript ENSMUST00000113976 Ensembl | MGI Sequence Detail 3754 Not Applicable  
polypeptide ENSMUSP00000109609 Ensembl | MGI Sequence Detail 298 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR027869 Protein of unknown function DUF4569
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 3
References
more
  • Summaries
    All 20
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory