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5430427O19Rik Gene Detail
Summary
  • Symbol
    5430427O19Rik
  • Name
    RIKEN cDNA 5430427O19 gene
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918648
    NCBI Gene: 71398
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:85870354-85891499 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 39.39 cM, cytoband B
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    139 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918648
protein coding gene ChrX:85776968-85891499 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035890
protein coding gene ChrX:81957013-81977873 (+)
A/J MGP_AJ_G0035875
protein coding gene ChrX:82061074-82083061 (+)
AKR/J MGP_AKRJ_G0035793
protein coding gene ChrX:84243419-84266549 (+)
BALB/cJ MGP_BALBcJ_G0035856
protein coding gene ChrX:80786795-80810458 (+)
C3H/HeJ MGP_C3HHeJ_G0035566
protein coding gene ChrX:82253723-82275307 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036387
protein coding gene ChrX:84457134-84481355 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033218
protein coding gene ChrX:80935748-80958004 (+)
CAST/EiJ MGP_CASTEiJ_G0034855
protein coding gene ChrX:67217824-67238516 (+)
CBA/J MGP_CBAJ_G0035541
protein coding gene ChrX:86752497-86773372 (+)
DBA/2J MGP_DBA2J_G0035696
protein coding gene ChrX:81447344-81468552 (+)
FVB/NJ MGP_FVBNJ_G0035635
protein coding gene ChrX:80855600-80876716 (+)
LP/J MGP_LPJ_G0035785
protein coding gene ChrX:82755056-82777916 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035672
protein coding gene ChrX:90264944-90291608 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036414
protein coding gene ChrX:81663734-81687642 (+)
PWK/PhJ MGP_PWKPhJ_G0034553
protein coding gene ChrX:65241036-65262206 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034383
protein coding gene ChrX:68159284-68179617 (+)
WSB/EiJ MGP_WSBEiJ_G0034994
protein coding gene ChrX:80578229-80599098 (+)



Homology
more
  • Human Ortholog
    CXorf21, chromosome X open reading frame 21
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CXorf21, chromosome X open reading frame 21
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 80231
    neXtProt AC: NX_Q9HAI6
    UniProt: Q9HAI6

  • Chr Location
    Xp21.2; chrX:30558824-30577916 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000025058 Ensembl Gene Model | MGI Sequence Detail 21146 C57BL/6J ±  kb
transcript ENSMUST00000113976 Ensembl | MGI Sequence Detail 3754 Not Applicable  
polypeptide ENSMUSP00000109609 Ensembl | MGI Sequence Detail 298 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR027869 Protein of unknown function DUF4569
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 3
References
more
  • Summaries
    All 22
    Gene Ontology 2
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory