Slc6a19os Gene Detail

Summary

• Symbol
  Slc6a19os
• Name
  solute carrier family 6 (neurotransmitter transporter), member 19, opposite strand
• Synonyms
  5430425J12Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1918640
  NCBI Gene: 71390
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr13:73848074-73857969 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 40.15 cM, cytoband C1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  350 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918640	antisense lncRNA gene	Chr13:73847945-73857972 (+)
129S1/SvImJ	ENSMUSG00200014284	lncRNA gene	Chr13:68239338-68249365 (+)
A/J	ENSMUSG00195030372	lncRNA gene	Chr13:68827352-68837382 (+)
AKR/J	ENSMUSG00220040536	lncRNA gene	Chr13:67421699-67431726 (+)
BALB/cJ	ENSMUSG00180027271	lncRNA gene	Chr13:69325737-69335767 (+)
C3H/HeJ	ENSMUSG00175008504	lncRNA gene	Chr13:69607250-69617277 (+)
C57BL/6NJ	ENSMUSG00215013161	lncRNA gene	Chr13:69391702-69401729 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002832	antisense lncRNA gene	Chr13:68342832-68353380 (+)
CAST/EiJ	ENSTCUG00005012193	lncRNA gene	Chr13:68913539-68923199 (+)
CBA/J	ENSMUSG00210010030	lncRNA gene	Chr13:68927054-68937083 (+)
DBA/2J	ENSMUSG00185018320	lncRNA gene	Chr13:72618584-72628613 (+)
FVB/NJ	ENSMUSG00205028076	lncRNA gene	Chr13:68305953-68315980 (+)
JF1/MsJ	ENSUMUG00000032315	lncRNA gene	Chr13:72384227-72393895 (+)
LP/J	ENSMUSG00230026993	lncRNA gene	Chr13:82540713-82550902 (+)
NOD/ShiLtJ	ENSMUSG00190044107	lncRNA gene	Chr13:68927059-68937181 (+)
NZO/HlLtJ	ENSMUSG00225028542	lncRNA gene	Chr13:75044549-75054574 (+)
PWK/PhJ	ENSLUMG00010012236	lncRNA gene	Chr13:68419760-68429445 (+)
SPRET/EiJ	ENSMSPG00010031359	lncRNA gene	Chr13:69314988-69324950 (+)
WSB/EiJ	ENSIUOG00005023064	lncRNA gene	Chr13:68183406-68193594 (+)

Homology

• Gene Tree
  Slc6a19os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Slc6a19os
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000021566 (Evidence)
• NCBI Gene
  71390

Representative Sequences			Length	Strain/Species
genomic	71390	NCBI Gene Model | MGI Sequence Detail	9896	C57BL/6J
transcript	NR_168890	RefSeq | MGI Sequence Detail	1400	C57BL/6
polypeptide	Q9D3K5	UniProt | EBI | MGI Sequence Detail	142	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 2

References

• Summaries
  All 17

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for Slc6a19os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr4114	Chr13:73847629-73847631 (+)	-444 bp
Tssr120331	Chr13:73848068-73848082 (+)	1 bp
Tssr120332	Chr13:73851838-73851843 (+)	3,767 bp