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5430402O13Rik Gene Detail
Summary
  • Symbol
    5430402O13Rik
  • Name
    RIKEN cDNA 5430402O13 gene
  • Synonyms
    3110047M22Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1918631
    NCBI Gene: 73183
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:50566643-50594865 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 24.32 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    161 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918631
lncRNA gene Chr6:50566643-50594865 (+)
129S1/SvImJ MGP_129S1SvImJ_G0004268
antisense lncRNA gene Chr6:49687829-49716972 (+)
A/J MGP_AJ_G0004246
antisense lncRNA gene Chr6:47367620-47395846 (+)
AKR/J MGP_AKRJ_G0004227
antisense lncRNA gene Chr6:49032948-49061156 (+)
BALB/cJ MGP_BALBcJ_G0004233
antisense lncRNA gene Chr6:47713666-47741897 (+)
C3H/HeJ MGP_C3HHeJ_G0004181
antisense lncRNA gene Chr6:49055354-49084554 (+)
C57BL/6NJ MGP_C57BL6NJ_G0004382
antisense lncRNA gene Chr6:50801334-50829538 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0003855
antisense lncRNA gene Chr6:44974747-45000732 (+)
CAST/EiJ MGP_CASTEiJ_G0004143
antisense lncRNA gene Chr6:48775673-48805353 (+)
CBA/J MGP_CBAJ_G0004175
antisense lncRNA gene Chr6:52940626-52968852 (+)
DBA/2J MGP_DBA2J_G0004191
antisense lncRNA gene Chr6:47282638-47311152 (+)
FVB/NJ MGP_FVBNJ_G0004207
antisense lncRNA gene Chr6:46919870-46948096 (+)
LP/J MGP_LPJ_G0004269
antisense lncRNA gene Chr6:49644460-49672774 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0004197
antisense lncRNA gene Chr6:55652112-55681977 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0004379
antisense lncRNA gene Chr6:48951918-48980179 (+)
PWK/PhJ MGP_PWKPhJ_G0004096
antisense lncRNA gene Chr6:46858214-46886705 (+)
SPRET/EiJ MGP_SPRETEiJ_G0004040
antisense lncRNA gene Chr6:48272723-48306502 (+)
WSB/EiJ MGP_WSBEiJ_G0004179
antisense lncRNA gene Chr6:48918093-48947601 (+)



Homology
less
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 73183 NCBI Gene Model | MGI Sequence Detail 28223 C57BL/6J ±  kb
transcript NR_015581 RefSeq | MGI Sequence Detail 1007 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 2
Other
Accession IDs
less
MGI:1920433
References
more
  • Summaries
    All 11
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
09/10/2019
MGI 6.14
The Jackson Laboratory