About   Help   FAQ
Foxn3
Gene Detail
Symbol

Name
ID
Foxn3
forkhead box N3
MGI:1918625
Synonyms
5430426H20Rik, Ches1, Ches1l, HTLFL1
Feature Type
protein coding gene
Genetic Map
Chromosome 12
49.93 cM, cytoband F1
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr12:99194980-99450111 bp, - strand
From VEGA annotation of GRCm38

  255132 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
Protein SuperFamily: forkhead box protein N3
Gene Tree: Foxn3
Mutations,
alleles, and
phenotypes
All mutations/alleles(59) : Gene trapped(59)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Foxn3 interacts with 233 markers (Mir7-1, Mir9-1, Mir9-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (8 annotations)
Process cell cycle, regulation of transcription, DNA-templated, ...
Component nucleus
Function DNA binding, sequence-specific DNA binding, ...
External Resources: FuncBase
Expression
Literature Summary: (5 records)
Data Summary: Results (154)    Tissues (147)    Images (5)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 154
cDNA source data(13)
External Resources: Allen Institute   Expression Atlas
Molecular
reagents
All nucleic(13) cDNA(13)
Microarray probesets(8)
Other database
links
VEGA Gene ModelOTTMUSG00000042153 (Evidence)
Ensembl Gene ModelENSMUSG00000033713 (Evidence)
Entrez Gene71375, 102637049
DFCITC1580036, TC1577073, TC1598725
DoTSDT.101324107, DT.492297, DT.97359476, DT.97410646
NIA Mouse Gene IndexU034255
Consensus CDS ProjectCCDS26103.1
International Mouse Knockout Project StatusFoxn3
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000042153 VEGA Gene Model | MGI Sequence Detail 255132 C57BL/6J ±  kb
transcript OTTMUST00000110608 VEGA | MGI Sequence Detail 2803 Not Applicable 
polypeptide OTTMUSP00000061739 VEGA | MGI Sequence Detail 457 Not Applicable 

For the selected sequences
All sequences(63) RefSeq(1) UniProt(11)
Polymorphisms
SNPs within 2kb(1975 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001766 Transcription factor, fork head
InterPro IPR018122 Transcription factor, fork head, conserved site
InterPro IPR011991 Winged helix-turn-helix DNA-binding domain
Protein Ontology PR:000007638 forkhead box protein N3
References
(Earliest) J:43593 Schorpp M, et al., Characterization of mouse and human nude genes. Immunogenetics. 1997;46(6):509-15
(Latest) J:168654 Chung YC, et al., Screening large numbers of expression patterns of transcription factors in late stages of the mouse thymus. Gene Expr Patterns. 2011 Jan-Feb;11(1-2):84-92
All references(47)
Other
accession IDs
MGI:1276572, MGI:2144745, MGI:2145044

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
12/16/2014
MGI 5.20
The Jackson Laboratory