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Prr16 Gene Detail
Summary
  • Symbol
    Prr16
  • Name
    proline rich 16
  • Synonyms
    5430406M13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918623
    NCBI Gene: 71373
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr18:51117898-51304641 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 18, 27.97 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1074 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918623
protein coding gene Chr18:51117898-51304641 (+)
129S1/SvImJ MGP_129S1SvImJ_G0024424
protein coding gene Chr18:50190477-50398630 (+)
A/J MGP_AJ_G0024390
protein coding gene Chr18:48248592-48446349 (+)
AKR/J MGP_AKRJ_G0024360
protein coding gene Chr18:49610305-49802240 (+)
BALB/cJ MGP_BALBcJ_G0024390
protein coding gene Chr18:48418804-48611163 (+)
C3H/HeJ MGP_C3HHeJ_G0024157
protein coding gene Chr18:49759190-49961010 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024836
protein coding gene Chr18:51854998-52077077 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0022269
protein coding gene Chr18:47840525-48029791 (+)
CAST/EiJ MGP_CASTEiJ_G0023632
protein coding gene Chr18:49667026-49875134 (+)
CBA/J MGP_CBAJ_G0024127
protein coding gene Chr18:53389485-53610180 (+)
DBA/2J MGP_DBA2J_G0024257
protein coding gene Chr18:47946081-48134782 (+)
FVB/NJ MGP_FVBNJ_G0024224
protein coding gene Chr18:47438787-47625248 (+)
LP/J MGP_LPJ_G0024342
protein coding gene Chr18:50216054-50421749 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0024254
protein coding gene Chr18:54996937-55231515 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024883
protein coding gene Chr18:49596675-49792210 (+)
PWK/PhJ MGP_PWKPhJ_G0023375
protein coding gene Chr18:47983148-48180841 (+)
SPRET/EiJ MGP_SPRETEiJ_G0023181
protein coding gene Chr18:49778189-49989181 (+)
WSB/EiJ MGP_WSBEiJ_G0023695
protein coding gene Chr18:49492835-49703523 (+)



Homology
more
  • Human Ortholog
    PRR16, proline rich 16
  • Vertebrate Orthologs
    10
  • Human Ortholog
    PRR16, proline rich 16
    Orthology source: HomoloGene, HGNC
  • Synonyms
    DSC54, LARGEN
  • Links
    NCBI Gene ID: 51334
    neXtProt AC: NX_Q569H4
    UniProt: Q569H4

  • Chr Location
    5q23.1; chr5:120464222-120794587 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 41152
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: PRR16
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 71373 NCBI Gene Model | MGI Sequence Detail 186744 C57BL/6J ±  kb
transcript NM_001081224 RefSeq | MGI Sequence Detail 2224 Not Specified  
polypeptide A3KMN5 UniProt | EBI | MGI Sequence Detail 304 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 13
    cDNA 13

    Microarray probesets 4
Other
Accession IDs
less
MGI:2147247
References
more
  • Summaries
    All 22
    Gene Ontology 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:212483 Yamamoto K, et al., Largen: a molecular regulator of mammalian cell size control. Mol Cell. 2014 Mar 20;53(6):904-15

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/11/2019
MGI 6.14
The Jackson Laboratory