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Chst9 Gene Detail
Summary
  • Symbol
    Chst9
  • Name
    carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9
  • Synonyms
    5430438D01Rik, GalNAc4ST-2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918617
    NCBI Gene: 71367
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr18:15451773-15718046 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 18, 8.85 cM, cytoband A1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1242 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918617
protein coding gene Chr18:15451773-15760157 (-)
129S1/SvImJ MGP_129S1SvImJ_G0024173
protein coding gene Chr18:12784188-13103987 (-)
A/J MGP_AJ_G0024135
protein coding gene Chr18:12499837-12796260 (-)
AKR/J MGP_AKRJ_G0024102
protein coding gene Chr18:12921134-13227073 (-)
BALB/cJ MGP_BALBcJ_G0024134
protein coding gene Chr18:12450065-12740713 (-)
C3H/HeJ MGP_C3HHeJ_G0023901
protein coding gene Chr18:12764517-13081431 (-)
C57BL/6NJ MGP_C57BL6NJ_G0024579
protein coding gene Chr18:13381652-13708262 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0022019
protein coding gene Chr18:11980851-12253933 (-)
CAST/EiJ MGP_CASTEiJ_G0023378
protein coding gene Chr18:12672770-12971909 (-)
CBA/J MGP_CBAJ_G0023873
protein coding gene Chr18:13648060-13980273 (-)
DBA/2J MGP_DBA2J_G0024002
protein coding gene Chr18:12321537-12613181 (-)
FVB/NJ MGP_FVBNJ_G0023967
protein coding gene Chr18:12160996-12464782 (-)
LP/J MGP_LPJ_G0024085
protein coding gene Chr18:12886045-13199684 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0023996
protein coding gene Chr18:13696568-14021671 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0024625
protein coding gene Chr18:12652378-12959371 (-)
PWK/PhJ MGP_PWKPhJ_G0023124
protein coding gene Chr18:12433802-12722291 (-)
SPRET/EiJ MGP_SPRETEiJ_G0022933
protein coding gene Chr18:12935817-13235238 (-)
WSB/EiJ MGP_WSBEiJ_G0023444
protein coding gene Chr18:12621681-12911934 (-)



Homology
more
  • Human Ortholog
    CHST9, carbohydrate sulfotransferase 9
  • Vertebrate Orthologs
    8
  • Human Ortholog
    CHST9, carbohydrate sulfotransferase 9
    Orthology source: HomoloGene, HGNC
  • Synonyms
    GalNAc4ST2, GALNAC4ST-2
  • Links
    NCBI Gene ID: 83539
    neXtProt AC: NX_Q7L1S5
    UniProt: Q7L1S5

  • Chr Location
    18q11.2; chr18:26908754-27185364 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 71367 NCBI Gene Model | MGI Sequence Detail 266274 C57BL/6J ±  kb
transcript NM_001364992 RefSeq | MGI Sequence Detail 1937 C57BL/6  
polypeptide Q76EC5 UniProt | EBI | MGI Sequence Detail 413 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 2
References
more
  • Summaries
    All 18
    Gene Ontology 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:85262 Okuda T, et al., Mouse N-Acetylgalactosamine 4-Sulfotransferases-1 and -2. Molecular Cloning, Expression, Chromosomal Mapping and Detection of Their Activity with GalNAcbeta1-4GlcNAcbeta1-octyl. J Biochem. 2003 Jul;134(1):111-20

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory