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5430400D12Rik Gene Detail
Summary
  • Symbol
    5430400D12Rik
  • Name
    RIKEN cDNA 5430400D12 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1918589
    NCBI Gene: 71339
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr7:79920723-79922521 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 45.27 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    30 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918589
lncRNA gene Chr7:79920723-79922521 (+)
129S1/SvImJ MGP_129S1SvImJ_G0004766
bidirectional promoter lncRNA gene Chr7:81837885-81839683 (+)
A/J MGP_AJ_G0004747
bidirectional promoter lncRNA gene Chr7:79949065-79950863 (+)
AKR/J MGP_AKRJ_G0004726
bidirectional promoter lncRNA gene Chr7:81666021-81667819 (+)
BALB/cJ MGP_BALBcJ_G0004729
bidirectional promoter lncRNA gene Chr7:79631801-79633599 (+)
C3H/HeJ MGP_C3HHeJ_G0004677
bidirectional promoter lncRNA gene Chr7:82319200-82320998 (+)
C57BL/6NJ MGP_C57BL6NJ_G0004879
bidirectional promoter lncRNA gene Chr7:85046592-85048390 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0004316
bidirectional promoter lncRNA gene Chr7:82474825-82476589 (+)
CAST/EiJ MGP_CASTEiJ_G0004631
bidirectional promoter lncRNA gene Chr7:73190607-73192406 (+)
CBA/J MGP_CBAJ_G0004670
bidirectional promoter lncRNA gene Chr7:87887120-87888918 (+)
DBA/2J MGP_DBA2J_G0004688
bidirectional promoter lncRNA gene Chr7:78505558-78507356 (+)
FVB/NJ MGP_FVBNJ_G0004707
bidirectional promoter lncRNA gene Chr7:78418068-78419866 (+)
LP/J MGP_LPJ_G0004767
bidirectional promoter lncRNA gene Chr7:83092055-83093853 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0004692
bidirectional promoter lncRNA gene Chr7:88048982-88050780 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0004882
bidirectional promoter lncRNA gene Chr7:81106974-81108772 (+)
PWK/PhJ MGP_PWKPhJ_G0004584
bidirectional promoter lncRNA gene Chr7:71685041-71686842 (+)
SPRET/EiJ MGP_SPRETEiJ_G0004517
bidirectional promoter lncRNA gene Chr7:68109720-68111521 (+)
WSB/EiJ MGP_WSBEiJ_G0004676
bidirectional promoter lncRNA gene Chr7:81428347-81430145 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    13 phenotype references
  • All Mutations and Alleles
    8
  • Chemically induced (other)
    1
  • Gene trapped
    5
  • Radiation induced
    2
  • Genomic Mutations
    3 involving 5430400D12Rik
  • Find Mice (IMSR)
Expression
less
  • cDNA Data
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000097699 Ensembl Gene Model | MGI Sequence Detail 1799 C57BL/6J ±  kb
transcript ENSMUST00000181717 Ensembl | MGI Sequence Detail 1690 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 21
    Phenotypes 13
  • Earliest
    J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
09/05/2019
MGI 6.14
The Jackson Laboratory