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5430400D12Rik Gene Detail
Summary
  • Symbol
    5430400D12Rik
  • Name
    RIKEN cDNA 5430400D12 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1918589
    NCBI Gene: 71339
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr7:79570471-79572269 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 7, 45.27 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    30 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918589
lncRNA gene Chr7:79570378-79576025 (+)
129S1/SvImJ MGP_129S1SvImJ_G0004766
bidirectional promoter lncRNA gene Chr7:81837885-81839683 (+)
A/J MGP_AJ_G0004747
bidirectional promoter lncRNA gene Chr7:79949065-79950863 (+)
AKR/J MGP_AKRJ_G0004726
bidirectional promoter lncRNA gene Chr7:81666021-81667819 (+)
BALB/cJ MGP_BALBcJ_G0004729
bidirectional promoter lncRNA gene Chr7:79631801-79633599 (+)
C3H/HeJ MGP_C3HHeJ_G0004677
bidirectional promoter lncRNA gene Chr7:82319200-82320998 (+)
C57BL/6NJ MGP_C57BL6NJ_G0004879
bidirectional promoter lncRNA gene Chr7:85046592-85048390 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0004316
bidirectional promoter lncRNA gene Chr7:82474825-82476589 (+)
CAST/EiJ MGP_CASTEiJ_G0004631
bidirectional promoter lncRNA gene Chr7:73190607-73192406 (+)
CBA/J MGP_CBAJ_G0004670
bidirectional promoter lncRNA gene Chr7:87887120-87888918 (+)
DBA/2J MGP_DBA2J_G0004688
bidirectional promoter lncRNA gene Chr7:78505558-78507356 (+)
FVB/NJ MGP_FVBNJ_G0004707
bidirectional promoter lncRNA gene Chr7:78418068-78419866 (+)
LP/J MGP_LPJ_G0004767
bidirectional promoter lncRNA gene Chr7:83092055-83093853 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0004692
bidirectional promoter lncRNA gene Chr7:88048982-88050780 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0004882
bidirectional promoter lncRNA gene Chr7:81106974-81108772 (+)
PWK/PhJ MGP_PWKPhJ_G0004584
bidirectional promoter lncRNA gene Chr7:71685041-71686842 (+)
SPRET/EiJ MGP_SPRETEiJ_G0004517
bidirectional promoter lncRNA gene Chr7:68109720-68111521 (+)
WSB/EiJ MGP_WSBEiJ_G0004676
bidirectional promoter lncRNA gene Chr7:81428347-81430145 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    13 phenotype references
  • All Mutations and Alleles
    7
  • Chemically induced (other)
    1
  • Gene trapped
    4
  • Radiation induced
    2
  • Genomic Mutations
    3 involving 5430400D12Rik
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000097699 Ensembl Gene Model | MGI Sequence Detail 1799 C57BL/6J ±  kb
transcript ENSMUST00000181717 Ensembl | MGI Sequence Detail 1690 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 21
    Phenotypes 13
  • Earliest
    J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/12/2024
MGI 6.23
The Jackson Laboratory