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Tbc1d9 Gene Detail
Summary
  • Symbol
    Tbc1d9
  • Name
    TBC1 domain family, member 9
  • Synonyms
    4933431N12Rik, C76116
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918560
    NCBI Gene: 71310
  • Gene Overview
    MyGene.info: TBC1D9
  • Alliance
  • Transcription Start Sites
    13 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:83165352-83272934 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 39.59 cM, cytoband C3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1502 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918560
protein coding gene Chr8:83165352-83272940 (.)
129S1/SvImJ MGP_129S1SvImJ_G0033827
protein coding gene Chr8:83954504-84067689 (+)
A/J MGP_AJ_G0033810
protein coding gene Chr8:80673501-80777333 (+)
AKR/J MGP_AKRJ_G0033736
protein coding gene Chr8:83048857-83159800 (+)
BALB/cJ MGP_BALBcJ_G0033803
protein coding gene Chr8:80786394-80897072 (+)
C3H/HeJ MGP_C3HHeJ_G0033512
protein coding gene Chr8:83678335-83792300 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034323
protein coding gene Chr8:87203230-87315448 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031264
protein coding gene Chr8:74516492-74620134 (+)
CAST/EiJ MGP_CASTEiJ_G0032843
protein coding gene Chr8:83077994-83190528 (+)
CBA/J MGP_CBAJ_G0033491
protein coding gene Chr8:90294990-90413962 (+)
DBA/2J MGP_DBA2J_G0033644
protein coding gene Chr8:80318639-80422718 (+)
FVB/NJ MGP_FVBNJ_G0033589
protein coding gene Chr8:79248724-79350835 (+)
LP/J MGP_LPJ_G0033734
protein coding gene Chr8:84081146-84197646 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033632
protein coding gene Chr8:92825862-92939059 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0034340
protein coding gene Chr8:83055761-83173380 (+)
PWK/PhJ MGP_PWKPhJ_G0032546
protein coding gene Chr8:79543164-79653354 (+)
SPRET/EiJ MGP_SPRETEiJ_G0032384
protein coding gene Chr8:81859674-81971545 (+)
WSB/EiJ MGP_WSBEiJ_G0032956
protein coding gene Chr8:83444509-83555634 (+)



Homology
more
  • Human Ortholog
    TBC1D9, TBC1 domain family member 9
  • Vertebrate Orthologs
    9
  • Human Ortholog
    TBC1D9, TBC1 domain family member 9
    Orthology source: HGNC, HomoloGene
  • Synonyms
    GRAMD9, MDR1
  • Links
    NCBI Gene ID: 23158
    neXtProt AC: NX_Q6ZT07
    UniProt: Q6ZT07

  • Chr Location
    4q31.21; chr4:140620782-140756317 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    31 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000031709 Ensembl Gene Model | MGI Sequence Detail 107583 C57BL/6J ±  kb
transcript ENSMUST00000093393 Ensembl | MGI Sequence Detail 5334 Not Applicable  
polypeptide ENSMUSP00000091093 Ensembl | MGI Sequence Detail 1264 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 65
    cDNA 65

    Microarray probesets 4
Other
Accession IDs
less
MGI:2142627, MGI:2142788, MGI:3034735
References
more
  • Summaries
    All 55
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 31
  • Earliest
    J:13049 Gruneberg H, Genetical studies on the skeleton of the mouse. XVIII. Three genes for syndactylism. J Genet. 1956;54:113-145
  • Latest
    J:266142 Grosjean F, et al., Pharmacologic control of oxidative stress and inflammation determines whether diabetic glomerulosclerosis progresses or decreases: A pilot study in sclerosis-prone mice. PLoS One. 2018;13(9):e0204366

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/04/2018
MGI 6.13
The Jackson Laboratory