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Platr20 Gene Detail
Summary
  • Symbol
    Platr20
  • Name
    pluripotency associated transcript 20
  • Synonyms
    5133400J02Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1918547
    NCBI Gene: 71297
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:51080660-51111245 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 31.01 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    235 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918547
lncRNA gene Chr11:51080660-51111245 (-)
129S1/SvImJ MGP_129S1SvImJ_G0005225
lincRNA gene Chr11:50407049-50437454 (-)
A/J MGP_AJ_G0005210
lincRNA gene Chr11:48520879-48551365 (-)
AKR/J MGP_AKRJ_G0005188
lincRNA gene Chr11:50048759-50075776 (-)
BALB/cJ MGP_BALBcJ_G0005190
lincRNA gene Chr11:48819543-48850490 (-)
C3H/HeJ MGP_C3HHeJ_G0005139
lincRNA gene Chr11:50078016-50111480 (-)
C57BL/6NJ MGP_C57BL6NJ_G0005342
lincRNA gene Chr11:51949825-51982061 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0004737
lincRNA gene Chr11:46094553-46126396 (-)
CAST/EiJ MGP_CASTEiJ_G0005086
lincRNA gene Chr11:50062425-50092876 (-)
CBA/J MGP_CBAJ_G0005129
lincRNA gene Chr11:54378205-54416186 (-)
DBA/2J MGP_DBA2J_G0005146
lincRNA gene Chr11:48233966-48265711 (-)
FVB/NJ MGP_FVBNJ_G0005171
lincRNA gene Chr11:47931497-47962479 (-)
LP/J MGP_LPJ_G0005227
lincRNA gene Chr11:50818232-50865380 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0005154
lincRNA gene Chr11:55790476-55821589 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0005345
lincRNA gene Chr11:50132567-50164435 (-)
PWK/PhJ MGP_PWKPhJ_G0005037
lincRNA gene Chr11:48739820-48771062 (-)
SPRET/EiJ MGP_SPRETEiJ_G0004959
lincRNA gene Chr11:49869629-49899482 (-)
WSB/EiJ MGP_WSBEiJ_G0005134
lincRNA gene Chr11:49786660-49817403 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
Representative SequencesLengthStrain/SpeciesFlank
genomic 71297 NCBI Gene Model | MGI Sequence Detail 30586 C57BL/6J ±  kb
For the selected sequence
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2
References
more
  • Summaries
    All 17
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 6
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:254597 Bhargava S, et al., The epigenetic modifier Fam208a is required to maintain epiblast cell fitness. Sci Rep. 2017 Aug 24;7(1):9322

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
05/10/2022
MGI 6.19
The Jackson Laboratory