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Ccdc57
Gene Detail
Symbol

Name
ID
Ccdc57
coiled-coil domain containing 57
MGI:1918526
Synonyms
4933434G05Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 11
84.59 cM, cytoband E2
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr11:120826529-120932872 bp, - strand
From VEGA annotation of GRCm38

  106344 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:52351  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 2 zebrafish

HCOP human homology predictions: CCDC57
Gene Tree: Ccdc57

Human
homologs
CCDC57, coiled-coil domain containing 57
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 284001
neXtProt AC: NX_Q2TAC2

Human Chr (Location): 17q25.3; chr17:82101470-82213520 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(258) : Gene trapped(251) Targeted(7)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Ccdc57 interacts with 64 markers (Mir15a, Mir27a, Mir27b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component cellular_component
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(21)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase ccdc57    NEW 
Molecular
reagents
All nucleic(21) cDNA(21)
Microarray probesets(2)
Other database
links
VEGA Gene Model OTTMUSG00000004162 (Evidence)
Ensembl Gene Model ENSMUSG00000048445 (Evidence)
Entrez Gene 71276 (Evidence)
UniGene 275751
DFCI TC1600442, TC1584699
DoTS DT.94232889, DT.60102175, DT.40180662
NIA Mouse Gene Index U033737
Consensus CDS Project CCDS25760.1
International Mouse Phenotyping Consortium Status Ccdc57
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000004162 VEGA Gene Model | MGI Sequence Detail 106344 C57BL/6J ±  kb
transcript OTTMUST00000009438 VEGA | MGI Sequence Detail 3403 Not Applicable 
polypeptide OTTMUSP00000004596 VEGA | MGI Sequence Detail 1016 Not Applicable 

For the selected sequences
All sequences(44) RefSeq(19) UniProt(3)
Polymorphisms
SNPs within 2kb(167 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
Protein Ontology PR:000032489 coiled-coil domain-containing protein 57
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(30)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory