About   Help   FAQ
Otud1 Gene Detail
Summary
  • Symbol
    Otud1
  • Name
    OTU domain containing 1
  • Synonyms
    4933428L19Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918448
    NCBI Gene: 71198
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:19658062-19660590 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 13.78 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    11 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918448
protein coding gene Chr2:19657752-19660590 (.)
129S1/SvImJ MGP_129S1SvImJ_G0025384
protein coding gene Chr2:17411051-17413882 (+)
A/J MGP_AJ_G0025362
protein coding gene Chr2:16689566-16692403 (+)
AKR/J MGP_AKRJ_G0025330
protein coding gene Chr2:17274828-17277665 (+)
BALB/cJ MGP_BALBcJ_G0025357
protein coding gene Chr2:16748804-16751635 (+)
C3H/HeJ MGP_C3HHeJ_G0025117
protein coding gene Chr2:17180233-17183064 (+)
C57BL/6NJ MGP_C57BL6NJ_G0025800
protein coding gene Chr2:17877191-17880022 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0023215
protein coding gene Chr2:16060168-16063003 (+)
CAST/EiJ MGP_CASTEiJ_G0024581
protein coding gene Chr2:17135624-17138470 (+)
CBA/J MGP_CBAJ_G0025096
protein coding gene Chr2:18639864-18642695 (+)
DBA/2J MGP_DBA2J_G0025228
protein coding gene Chr2:16630070-16632907 (+)
FVB/NJ MGP_FVBNJ_G0025191
protein coding gene Chr2:16434842-16437673 (+)
LP/J MGP_LPJ_G0025315
protein coding gene Chr2:17236477-17239308 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0025222
protein coding gene Chr2:18587294-18590126 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0025858
protein coding gene Chr2:17209105-17211936 (+)
PWK/PhJ MGP_PWKPhJ_G0024330
protein coding gene Chr2:16508904-16511748 (+)
SPRET/EiJ MGP_SPRETEiJ_G0024130
protein coding gene Chr2:17340912-17343743 (+)
WSB/EiJ MGP_WSBEiJ_G0024651
protein coding gene Chr2:17280997-17283833 (+)



Homology
more
  • Human Ortholog
    OTUD1, OTU deubiquitinase 1
  • Vertebrate Orthologs
    7
  • Human Ortholog
    OTUD1, OTU deubiquitinase 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    DUBA7, OTDC1
  • Links
    NCBI Gene ID: 220213
    neXtProt AC: NX_Q5VV17
    UniProt: Q5VV17

  • Chr Location
    10p12.2; chr10:23439269-23442381 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 71198 NCBI Gene Model | MGI Sequence Detail 2529 C57BL/6J ±  kb
transcript NM_027715 RefSeq | MGI Sequence Detail 2529 C57BL/6  
polypeptide Q9CUB6 UniProt | EBI | MGI Sequence Detail 454 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 21
    Genomic 1
    cDNA 19
    Primer pair 1

    Microarray probesets 3
References
more
  • Summaries
    All 27
    Developmental Gene Expression 3
    Gene Ontology 3
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:210443 Yamada M, et al., Specification of spatial identities of cerebellar neuron progenitors by ptf1a and atoh1 for proper production of GABAergic and glutamatergic neurons. J Neurosci. 2014 Apr 2;34(14):4786-800

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/06/2018
MGI 6.13
The Jackson Laboratory