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Rbbp5
Gene Detail
 Symbol
Name
ID
Rbbp5
retinoblastoma binding protein 5
MGI:1918367
Synonyms 4933411J24Rik
Feature Type protein coding gene
Genetic Map
Chromosome 1
57.24 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr1:132477367-132505665 bp, + strand
From NCBI annotation of GRCm38

  28299 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:3709  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Rbbp5

Human
homologs
Human Homolog RBBP5, retinoblastoma binding protein 5
NCBI Gene ID 5929
neXtProt AC  NX_Q15291
Human Synonyms  RBQ3, SWD1
Human Chr (Location)  1q32; chr1:205086142-205122022 (-)  GRCh38
Alleles
and
phenotypes
All alleles(57) : Gene trapped(57)
Incidental mutations (data from Mutagenetix , APF )
Gene Ontology
(GO)
classifications
All GO classifications: (18 annotations)
Process cellular response to DNA damage stimulus, chromatin modification, ...
Component histone methyltransferase complex, MLL1 complex, ...
Function histone methyltransferase activity (H3-K4 specific), methylated histone binding, ...
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (24)    Tissues (15)    Images (2)
Theiler Stages: 23
Assay TypeResults
RNA in situ 24
cDNA source data(14)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(14) cDNA(14)
Microarray probesets(3)
Other database
links
Ensembl Gene ModelENSMUSG00000026439 (Evidence)
Entrez Gene213464 (Evidence)
DFCITC1579017, TC1583740, TC1698130, TC1762016
DoTSDT.101313945, DT.101383715, DT.110531116, DT.55280555, DT.97360570
NIA Mouse Gene IndexU000803, U338720
PDB2XL2, 2XL3
Consensus CDS ProjectCCDS15286.1
International Mouse Knockout Project StatusRbbp5
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 213464 NCBI Gene Model | MGI Sequence Detail 28299 C57BL/6J ±  kb
transcript NM_172517 RefSeq | MGI Sequence Detail 3632 C57BL/6 
polypeptide Q8BX09 UniProt | EBI | MGI Sequence Detail 538 Not Applicable 

For the selected sequences
All sequences(50) RefSeq(10) UniProt(2)
Polymorphisms SNPs within 2kb(196 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001680 WD40 repeat
InterPro IPR017986 WD40-repeat-containing domain
InterPro IPR015943 WD40/YVTN repeat-like-containing domain
Protein Ontology PR:000013777 retinoblastoma-binding protein 5
Graphical View of Protein Domain Structure
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:204007 Ravnskjaer K, et al., Glucagon regulates gluconeogenesis through KAT2B- and WDR5-mediated epigenetic effects. J Clin Invest. 2013 Oct 1;123(10):4318-28
All references(39)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory