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Sntg1
Gene Detail
 Symbol
Name
ID
Sntg1
syntrophin, gamma 1
MGI:1918346
Synonyms G1SYN, SYN4
Feature Type protein coding gene
Genetic Map
Chromosome 1
2.08 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr1:8361475-9299878 bp, - strand
From VEGA annotation of GRCm38

  938404 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:56834  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Sntg1

Human
homologs
Human Homolog SNTG1, syntrophin, gamma 1
NCBI Gene ID 54212
neXtProt AC  NX_Q9NSN8
Human Synonyms  G1SYN, SYN4
Human Chr (Location)  8q11-q12; chr8:49909789-50794118 (+)  GRCh38
Alleles
and
phenotypes
All alleles(15) : Gene trapped(13) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Gene Ontology
(GO)
classifications
All GO classifications: (6 annotations)
Component cytoplasm, cytoskeleton, ...
Function actin binding, protein C-terminus binding
External Resources: FuncBase
Expression
cDNA source data(5)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(9) Genomic(1) cDNA(7) Other(1)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000033160 (Evidence)
Ensembl Gene ModelENSMUSG00000025909 (Evidence)
Entrez Gene71096 (Evidence)
DFCITC1583213, TC1593865, TC1595768, TC1595954, TC1610450, TC1612911, TC1647082
DoTSDT.101330987, DT.101366816, DT.101366818, DT.101704425, DT.55144085, DT.91305453, DT.91441740, DT.97347305
NIA Mouse Gene IndexU021109
Consensus CDS ProjectCCDS35509.1, CCDS69860.1
International Mouse Knockout Project StatusSntg1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000033160 VEGA Gene Model | MGI Sequence Detail 938404 C57BL/6J ±  kb
transcript OTTMUST00000082929 VEGA | MGI Sequence Detail 4884 Not Applicable 
polypeptide OTTMUSP00000044491 VEGA | MGI Sequence Detail 527 Not Applicable 

For the selected sequences
All sequences(87) RefSeq(20) UniProt(8)
Polymorphisms SNPs within 2kb(7984 from dbSNP Build 137)    SNPs within 2kb including multiple locations(8016)
Protein-related
information
ResourceIDDescription
InterPro IPR015483 Gamma 1 syntrophin
InterPro IPR001478 PDZ domain
InterPro IPR001849 Pleckstrin homology domain
InterPro IPR011993 Pleckstrin homology-like domain
InterPro IPR015482 Syntrophin
Protein Ontology PR:000015353 gamma-1-syntrophin
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(30)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory