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Sntg1
Gene Detail
Symbol

Name
ID
Sntg1
syntrophin, gamma 1
MGI:1918346
Synonyms
G1SYN, SYN4
Feature Type
protein coding gene
Genetic Map
Chromosome 1
2.08 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr1:8361475-9299878 bp, - strand
From VEGA annotation of GRCm38

  938404 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:56834  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: SNTG1
Gene Tree: Sntg1

Human
homologs
SNTG1, syntrophin, gamma 1
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 54212
neXtProt AC: NX_Q9NSN8

Human Synonyms: G1SYN, SYN4

Human Chr (Location): 8q11.21; chr8:49909789-50796442 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(15) : Gene trapped(13) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Sntg1 interacts with 297 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
Expression
cDNA source data(5)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase sntg1    NEW 
Molecular
reagents
All nucleic(9) Genomic(1) cDNA(7) Other(1)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000033160 (Evidence)
Ensembl Gene Model ENSMUSG00000025909 (Evidence)
Entrez Gene 71096 (Evidence)
DFCI TC1583213, TC1593865, TC1595768, TC1595954, TC1610450, TC1612911, TC1647082
DoTS DT.101330987, DT.101366816, DT.101366818, DT.101704425, DT.55144085, DT.91305453, DT.91441740, DT.97347305
NIA Mouse Gene Index U021109
Consensus CDS Project CCDS35509.1, CCDS69860.1
International Mouse Phenotyping Consortium Status Sntg1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000033160 VEGA Gene Model | MGI Sequence Detail 938404 C57BL/6J ±  kb
transcript OTTMUST00000082929 VEGA | MGI Sequence Detail 4887 Not Applicable 
polypeptide OTTMUSP00000044491 VEGA | MGI Sequence Detail 517 Not Applicable 

For the selected sequences
All sequences(85) RefSeq(18) UniProt(6)
Polymorphisms
SNPs within 2kb(7984 from dbSNP Build 137)    SNPs within 2kb including multiple locations(8016)
Protein-related
information
ResourceIDDescription
InterPro IPR015483 Gamma 1 syntrophin
InterPro IPR001478 PDZ domain
InterPro IPR001849 Pleckstrin homology domain
InterPro IPR011993 Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)
InterPro IPR015482 Syntrophin
Protein Ontology PR:000015353 gamma-1-syntrophin
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(29)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory