4933411G06Rik Gene Detail

Summary

• Symbol
  4933411G06Rik
• Name
  RIKEN cDNA 4933411G06 gene

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1918340
  NCBI Gene: 71090
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:51632270-51633290 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 25.83 cM, cytoband B3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918340	lncRNA gene	Chr10:51632240-51633431 (-)
129S1/SvImJ	ENSMUSG00200008019	lncRNA gene	Chr10:48521760-48522781 (-)
A/J	ENSMUSG00195003302	lncRNA gene	Chr10:48796464-48797485 (-)
AKR/J	ENSMUSG00220006489	lncRNA gene	Chr10:48476515-48477536 (-)
BALB/cJ	ENSMUSG00180012535	lncRNA gene	Chr10:48926114-48927135 (-)
C3H/HeJ	ENSMUSG00175010443	lncRNA gene	Chr10:48667297-48668318 (-)
C57BL/6NJ	ENSMUSG00215002250	lncRNA gene	Chr10:48431204-48432225 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0015309	protein coding gene	Chr10:46697572-46698593 (-)
CAST/EiJ	ENSTCUG00005008689	lncRNA gene	Chr10:48664798-48665820 (-)
CBA/J	ENSMUSG00210008699	lncRNA gene	Chr10:48570531-48571552 (-)
DBA/2J	ENSMUSG00185003355	lncRNA gene	Chr10:48726670-48727691 (-)
FVB/NJ	ENSMUSG00205005478	lncRNA gene	Chr10:48642562-48643583 (-)
JF1/MsJ	ENSUMUG00000026917	lncRNA gene	Chr10:48416839-48417860 (-)
LP/J	ENSMUSG00230024326	lncRNA gene	Chr10:50528217-50529238 (-)
NOD/ShiLtJ	ENSMUSG00190005615	lncRNA gene	Chr10:48890987-48892008 (-)
NZO/HlLtJ	ENSMUSG00225022850	lncRNA gene	Chr10:54809120-54810141 (-)
PWK/PhJ	ENSLUMG00010004773	lncRNA gene	Chr10:48547329-48548350 (-)
SPRET/EiJ	ENSMSPG00010014114	lncRNA gene	Chr10:49859428-49860443 (-)
WSB/EiJ	ENSIUOG00005015254	lncRNA gene	Chr10:48517542-48518564 (-)

Homology

• Gene Tree
  4933411G06Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 4933411G06Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000062224 (Evidence)
• NCBI Gene
  71090

Representative Sequences			Length	Strain/Species
genomic	71090	NCBI Gene Model | MGI Sequence Detail	1021	C57BL/6J
transcript	NR_045158	RefSeq | MGI Sequence Detail	1021	C57BL/6
polypeptide	Q9D466	UniProt | EBI | MGI Sequence Detail	117	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR022617 Rad60/SUMO-like domain
  IPR000626 Ubiquitin-like domain
  IPR029071 Ubiquitin-like domain superfamily

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 17

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4933411G06Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr97567	Chr10:51633285-51633297 (-)	-1 bp
Tssr97566	Chr10:51633254-51633266 (-)	30 bp