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Tmem30c Gene Detail
Summary
  • Symbol
    Tmem30c
  • Name
    transmembrane protein 30C
  • Synonyms
    4933401B01Rik, 4933409A18Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918277
    NCBI Gene: 71027
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:57266139-57292865 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 34.22 cM, cytoband C1.1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    365 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918277
protein coding gene Chr16:57266139-57301904 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022897
protein coding gene Chr16:56415184-56442836 (-)
A/J MGP_AJ_G0022864
protein coding gene Chr16:53998701-54021805 (-)
AKR/J MGP_AKRJ_G0022836
protein coding gene Chr16:55701477-55734416 (-)
BALB/cJ MGP_BALBcJ_G0022864
protein coding gene Chr16:54101168-54127813 (-)
C3H/HeJ MGP_C3HHeJ_G0022627
protein coding gene Chr16:55897268-55926767 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023312
protein coding gene Chr16:57983062-58008189 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020823
protein coding gene Chr16:53646219-53673561 (-)
CAST/EiJ MGP_CASTEiJ_G0022154
protein coding gene Chr16:56281573-56302373 (-)
CBA/J MGP_CBAJ_G0022600
protein coding gene Chr16:60330895-60361300 (-)
DBA/2J MGP_DBA2J_G0022732
protein coding gene Chr16:53736180-53758690 (-)
FVB/NJ MGP_FVBNJ_G0022707
protein coding gene Chr16:53505716-53530174 (-)
LP/J MGP_LPJ_G0022799
protein coding gene Chr16:56232936-56254464 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022725
protein coding gene Chr16:60668782-60697983 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023327
protein coding gene Chr16:55850179-55877476 (-)
PWK/PhJ MGP_PWKPhJ_G0021893
protein coding gene Chr16:54049303-54079251 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021723
protein coding gene Chr16:55632455-55654910 (-)
WSB/EiJ MGP_WSBEiJ_G0022198
protein coding gene Chr16:55898061-55922215 (-)



Homology
more
  • Human Ortholog
    TMEM30CP, transmembrane protein 30C, pseudogene
  • Vertebrate Orthologs
    8
  • Human Ortholog
    TMEM30CP, transmembrane protein 30C, pseudogene
    Orthology source: HGNC
  • Synonyms
    CDC50C, TMEM30C
  • Links
    NCBI Gene ID: 644444
    UniProt: A0ZSE6

  • Chr Location
    3q12.1; chr3:100185824-100194186 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000022753 Ensembl Gene Model | MGI Sequence Detail 26727 C57BL/6J ±  kb
transcript ENSMUST00000023434 Ensembl | MGI Sequence Detail 2973 Not Applicable  
polypeptide ENSMUSP00000023434 Ensembl | MGI Sequence Detail 342 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 5
Other
Accession IDs
less
MGI:1918354
References
more
  • Summaries
    All 24
    Developmental Gene Expression 1
    Gene Ontology 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:263646 Horiuchi K, et al., Impaired Spermatogenesis, Muscle, and Erythrocyte Function in U12 Intron Splicing-Defective Zrsr1 Mutant Mice. Cell Rep. 2018 Apr 3;23(1):143-155

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
12/03/2019
MGI 6.14
The Jackson Laboratory