About   Help   FAQ
Cabs1 Gene Detail
Summary
  • Symbol
    Cabs1
  • Name
    calcium binding protein, spermatid specific 1
  • Synonyms
    4931407G18Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918227
    NCBI Gene: 70977
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:87979451-87981541 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 43.56 cM, cytoband E2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    16 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918227
protein coding gene Chr5:87979439-87981544 (+)
129S1/SvImJ MGP_129S1SvImJ_G0029698
protein coding gene Chr5:88958426-88960531 (+)
A/J MGP_AJ_G0029665
protein coding gene Chr5:85327217-85329322 (+)
AKR/J MGP_AKRJ_G0029611
protein coding gene Chr5:88150025-88152130 (+)
BALB/cJ MGP_BALBcJ_G0029674
protein coding gene Chr5:86248331-86250436 (+)
C3H/HeJ MGP_C3HHeJ_G0029397
protein coding gene Chr5:88546284-88548389 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030129
protein coding gene Chr5:92603691-92605796 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027367
protein coding gene Chr5:80924591-80926688 (+)
CAST/EiJ MGP_CASTEiJ_G0028807
protein coding gene Chr5:87951662-87953767 (+)
CBA/J MGP_CBAJ_G0029366
protein coding gene Chr5:95537107-95539212 (+)
DBA/2J MGP_DBA2J_G0029511
protein coding gene Chr5:85494356-85496461 (+)
FVB/NJ MGP_FVBNJ_G0029471
protein coding gene Chr5:84402586-84404691 (+)
LP/J MGP_LPJ_G0029599
protein coding gene Chr5:89367347-89369452 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029500
protein coding gene Chr5:100669490-100672437 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030162
protein coding gene Chr5:87715781-87717886 (+)
PWK/PhJ MGP_PWKPhJ_G0028526
protein coding gene Chr5:84492510-84494699 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028363
protein coding gene Chr5:87128738-87130843 (+)
WSB/EiJ MGP_WSBEiJ_G0028886
protein coding gene Chr5:88107835-88109937 (+)



Homology
more
  • Human Ortholog
    CABS1, calcium binding protein, spermatid associated 1
  • Vertebrate Orthologs
    7
  • Human Ortholog
    CABS1, calcium binding protein, spermatid associated 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C4orf35, CLPH, NYD-SP26
  • Links
    NCBI Gene ID: 85438
    neXtProt AC: NX_Q96KC9
    UniProt: Q96KC9

  • Chr Location
    4q13.3; chr4:70334954-70337116 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    2
  • Radiation induced
    1
  • Spontaneous
    1
  • Genomic Mutations
    4 involving Cabs1
  • Incidental Mutations
    APF , CvDC
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 70977 NCBI Gene Model | MGI Sequence Detail 2091 C57BL/6J ±  kb
transcript NM_027631 RefSeq | MGI Sequence Detail 1490 C57BL/6  
polypeptide Q8C633 UniProt | EBI | MGI Sequence Detail 391 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000005600 calcium-binding and spermatid-specific protein 1
  • InterPro Domains
    IPR026118 Calcium-binding and spermatid-specific protein 1
Molecular
Reagents
less
  • All nucleic 12
    cDNA 12

    Microarray probesets 3
Other
Accession IDs
less
MGI:2140871
References
more
  • Summaries
    All 30
    Gene Ontology 4
    Phenotypes 6
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
10/15/2019
MGI 6.14
The Jackson Laboratory