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Spata1 Gene Detail
Summary
  • Symbol
    Spata1
  • Name
    spermatogenesis associated 1
  • Synonyms
    4921536I21Rik, SP-2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918201
    NCBI Gene: 70951
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:146457196-146499753 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 71.30 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    156 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918201
protein coding gene Chr3:146457196-146499838 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027972
protein coding gene Chr3:149974731-150021705 (-)
A/J MGP_AJ_G0027931
protein coding gene Chr3:144586038-144628087 (-)
AKR/J MGP_AKRJ_G0027897
protein coding gene Chr3:148447761-148490768 (-)
BALB/cJ MGP_BALBcJ_G0027943
protein coding gene Chr3:144412005-144453754 (-)
C3H/HeJ MGP_C3HHeJ_G0027673
protein coding gene Chr3:148815828-148857946 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028386
protein coding gene Chr3:154998351-155043447 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025724
protein coding gene Chr3:139649987-139689562 (-)
CAST/EiJ MGP_CASTEiJ_G0027126
protein coding gene Chr3:148795716-148841044 (-)
CBA/J MGP_CBAJ_G0027648
protein coding gene Chr3:160507486-160553437 (-)
DBA/2J MGP_DBA2J_G0027788
protein coding gene Chr3:143738113-143782107 (-)
FVB/NJ MGP_FVBNJ_G0027755
protein coding gene Chr3:141156835-141197934 (-)
LP/J MGP_LPJ_G0027899
protein coding gene Chr3:151346320-151403950 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027788
protein coding gene Chr3:168780940-168831401 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028445
protein coding gene Chr3:148032769-148078445 (-)
PWK/PhJ MGP_PWKPhJ_G0026849
protein coding gene Chr3:143593835-143637464 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026677
protein coding gene Chr3:146198301-146243244 (-)
WSB/EiJ MGP_WSBEiJ_G0027206
protein coding gene Chr3:149005378-149054658 (-)



Homology
more
  • Human Ortholog
    SPATA1, spermatogenesis associated 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SPATA1, spermatogenesis associated 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    SP-2, SPAP1
  • Links
    NCBI Gene ID: 100505741
    neXtProt AC: NX_Q5VX52
    UniProt: Q5VX52

  • Chr Location
    chr1:84506301-84556495 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 23356
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: SPATA1
  • Gene Tree
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028188 Ensembl Gene Model | MGI Sequence Detail 42558 C57BL/6J ±  kb
transcript ENSMUST00000197980 Ensembl | MGI Sequence Detail 1807 Not Applicable  
polypeptide ENSMUSP00000142800 Ensembl | MGI Sequence Detail 444 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR039062 Spermatogenesis-associated protein 1
    IPR031478 Spermatogenesis-associated protein 1, C-terminal domain
Molecular
Reagents
less
  • All nucleic 19
    cDNA 19

    Microarray probesets 3
Other
Accession IDs
less
MGI:2139945
References
more
  • Summaries
    All 24
    Developmental Gene Expression 1
    Diseases 1
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:215128 Moon AM, et al., Disruption of G-protein gamma5 subtype causes embryonic lethality in mice. PLoS One. 2014;9(3):e90970

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory