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Spata1 Gene Detail
Summary
  • Symbol
    Spata1
  • Name
    spermatogenesis associated 1
  • Synonyms
    4921536I21Rik, SP-2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918201
    NCBI Gene: 70951
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:146457196-146499753 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 71.30 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    156 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918201
protein coding gene Chr3:146457196-146499793 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027972
protein coding gene Chr3:149974731-150021705 (-)
A/J MGP_AJ_G0027931
protein coding gene Chr3:144586038-144628087 (-)
AKR/J MGP_AKRJ_G0027897
protein coding gene Chr3:148447761-148490768 (-)
BALB/cJ MGP_BALBcJ_G0027943
protein coding gene Chr3:144412005-144453754 (-)
C3H/HeJ MGP_C3HHeJ_G0027673
protein coding gene Chr3:148815828-148857946 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028386
protein coding gene Chr3:154998351-155043447 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025724
protein coding gene Chr3:139649987-139689562 (-)
CAST/EiJ MGP_CASTEiJ_G0027126
protein coding gene Chr3:148795716-148841044 (-)
CBA/J MGP_CBAJ_G0027648
protein coding gene Chr3:160507486-160553437 (-)
DBA/2J MGP_DBA2J_G0027788
protein coding gene Chr3:143738113-143782107 (-)
FVB/NJ MGP_FVBNJ_G0027755
protein coding gene Chr3:141156835-141197934 (-)
LP/J MGP_LPJ_G0027899
protein coding gene Chr3:151346320-151403950 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027788
protein coding gene Chr3:168780940-168831401 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028445
protein coding gene Chr3:148032769-148078445 (-)
PWK/PhJ MGP_PWKPhJ_G0026849
protein coding gene Chr3:143593835-143637464 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026677
protein coding gene Chr3:146198301-146243244 (-)
WSB/EiJ MGP_WSBEiJ_G0027206
protein coding gene Chr3:149005378-149054658 (-)



Homology
more
  • Human Ortholog
    SPATA1, spermatogenesis associated 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SPATA1, spermatogenesis associated 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    SP-2, SPAP1
  • Links
    NCBI Gene ID: 100505741
    neXtProt AC: NX_Q5VX52
    UniProt: Q5VX52

  • Chr Location
    chr1:84506301-84556495 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 23356
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: SPATA1
  • Gene Tree
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028188 Ensembl Gene Model | MGI Sequence Detail 42558 C57BL/6J ±  kb
transcript ENSMUST00000197980 Ensembl | MGI Sequence Detail 1807 Not Applicable  
polypeptide ENSMUSP00000142800 Ensembl | MGI Sequence Detail 444 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR039062 Spermatogenesis-associated protein 1
    IPR031478 Spermatogenesis-associated protein 1, C-terminal domain
Molecular
Reagents
less
  • All nucleic 19
    cDNA 19

    Microarray probesets 3
Other
Accession IDs
less
MGI:2139945
References
more
  • Summaries
    All 24
    Developmental Gene Expression 1
    Diseases 1
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:215128 Moon AM, et al., Disruption of G-protein gamma5 subtype causes embryonic lethality in mice. PLoS One. 2014;9(3):e90970

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
11/10/2020
MGI 6.16
The Jackson Laboratory