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Trim45
Gene Detail
Symbol

Name
ID
Trim45
tripartite motif-containing 45
MGI:1918187
Synonyms
4921530N01Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 3
43.85 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr3:100922202-100934011 bp, + strand
From VEGA annotation of GRCm38

  11810 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:11865  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Trim45

Human
homologs
Human Homolog TRIM45, tripartite motif containing 45
NCBI Gene ID 80263
neXtProt AC  NX_Q9H8W5
Human Synonyms  RNF99
Human Chr (Location)  1p13.1; chr1:117111055-117121789 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Gene trapped(1) Targeted(5)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Trim45 interacts with 295 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (9 annotations)
Process bone development
Component cytoplasm, intercellular bridge, ...
Function metal ion binding, zinc ion binding
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (69)    Tissues (34)    Images (18)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 69
cDNA source data(21)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(21) cDNA(21)
Microarray probesets(2)
Other database
links
VEGA Gene ModelOTTMUSG00000007079 (Evidence)
Ensembl Gene ModelENSMUSG00000033233 (Evidence)
Entrez Gene229644 (Evidence)
UniGene189351
DFCITC1598194, TC1585101, TC1675856
DoTSDT.99856384, DT.94230456, DT.101372535, DT.55171067
NIA Mouse Gene IndexU042464
Consensus CDS ProjectCCDS17678.1, CCDS51018.1
International Mouse Knockout Project StatusTrim45
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000007079 VEGA Gene Model | MGI Sequence Detail 11810 C57BL/6J ±  kb
transcript OTTMUST00000016377 VEGA | MGI Sequence Detail 1912 Not Applicable 
polypeptide OTTMUSP00000007492 VEGA | MGI Sequence Detail 638 Not Applicable 

For the selected sequences
All sequences(47) RefSeq(6) UniProt(7)
Polymorphisms
SNPs within 2kb(67 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR003649 B-box, C-terminal
InterPro IPR001298 Filamin/ABP280 repeat
InterPro IPR017868 Filamin/ABP280 repeat-like
InterPro IPR014756 Immunoglobulin E-set
InterPro IPR013783 Immunoglobulin-like fold
InterPro IPR000315 Zinc finger, B-box
InterPro IPR018957 Zinc finger, C3HC4 RING-type
InterPro IPR013083 Zinc finger, RING/FYVE/PHD-type
InterPro IPR001841 Zinc finger, RING-type
InterPro IPR017907 Zinc finger, RING-type, conserved site
Protein Ontology PR:000016659 tripartite motif-containing protein 45
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:188142 Bassett JH, et al., Rapid-throughput skeletal phenotyping of 100 knockout mice identifies 9 new genes that determine bone strength. PLoS Genet. 2012 Aug;8(8):e1002858
All references(34)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/16/2014
MGI 5.20
The Jackson Laboratory