About   Help   FAQ
Spdya
Gene Detail
Symbol

Name
ID
Spdya
speedy homolog A (Xenopus laevis)
MGI:1918141
Synonyms
4921517J08Rik, 4930548B21Rik, Spdy1, speedy A1, speedy A2, speedy/ringo
Feature Type
protein coding gene
Genetic Map
Chromosome 17
41.87 cM, cytoband E2
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr17:71552061-71589533 bp, + strand
From VEGA annotation of GRCm38

  37473 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:16357  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Spdya

Human
homologs
Human Homolog SPDYA, speedy/RINGO cell cycle regulator family member A
NCBI Gene ID 245711
neXtProt AC  NX_Q5MJ70
Human Synonyms  RINGO3, RINGOA, SPDY1, SPY1
Human Chr (Location)  2p23.2; chr2:28810834-28850610 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(1) : Gene trapped(1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Spdya interacts with 145 markers (Mir7-2, Mir7b, Mir15a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (10 annotations)
Process cell cycle, cellular response to DNA damage stimulus, ...
Component nucleus
Function protein kinase binding
External Resources: FuncBase
Expression
Literature Summary: (5 records)
Data Summary: Results (144)    Tissues (110)    Images (14)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 136
Northern blot 8
cDNA source data(9)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(10) cDNA(10)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000033091 (Evidence)
Ensembl Gene ModelENSMUSG00000052525 (Evidence)
Entrez Gene70891 (Evidence)
UniGene477599
DFCITC1589715, TC1600602
DoTSDT.101705389, DT.40169411
Consensus CDS ProjectCCDS50178.1, CCDS50179.1
International Mouse Knockout Project StatusSpdya
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000033091 VEGA Gene Model | MGI Sequence Detail 37473 C57BL/6J ±  kb
transcript OTTMUST00000082662 VEGA | MGI Sequence Detail 933 Not Applicable 
polypeptide OTTMUSP00000044342 VEGA | MGI Sequence Detail 310 Not Applicable 

For the selected sequences
All sequences(44) RefSeq(11) UniProt(5)
Polymorphisms
SNPs within 2kb(183 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR020984 Cell cycle regulatory protein, Spy1
Protein Ontology PR:000015509 speedy protein A
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:209131 Saba R, et al., CYP26B1 promotes male germ cell differentiation by suppressing STRA8-dependent meiotic and STRA8-independent mitotic pathways. Dev Biol. 2014 May 15;389(2):173-81
All references(33)
Other
accession IDs
MGI:1922581

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/18/2014
MGI 5.20
The Jackson Laboratory