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Spdya
Gene Detail
Symbol

Name
ID
Spdya
speedy/RINGO cell cycle regulator family, member A
MGI:1918141
Synonyms
4921517J08Rik, 4930548B21Rik, Spdy1, speedy A1, speedy A2, speedy/ringo
Feature Type
protein coding gene
Genetic Map
Chromosome 17
41.87 cM, cytoband E2
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr17:71552061-71589533 bp, + strand
From VEGA annotation of GRCm38

  37473 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:16357  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: SPDYA
Gene Tree: Spdya

Human
homologs
SPDYA, speedy/RINGO cell cycle regulator family member A
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 245711
neXtProt AC: NX_Q5MJ70

Human Synonyms: RINGO3, RINGOA, SPDY1, SPY1

Human Chr (Location): 2p23.2; chr2:28810834-28850610 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(1) : Gene trapped(1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Spdya interacts with 145 markers (Mir7-2, Mir7b, Mir15a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (10 annotations)
Process cell cycle, cellular response to DNA damage stimulus, ...
Component nucleus
Function protein kinase binding
External Resources: FuncBase
Expression
Literature Summary: (6 records)
Data Summary: Results (146)    Tissues (111)    Images (15)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 136
Northern blot 8
RT-PCR 2
cDNA source data(9)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase spdya ; ZFIN spdya    NEW 
Molecular
reagents
All nucleic(11) cDNA(10) Primer pair(1)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000033091 (Evidence)
Ensembl Gene Model ENSMUSG00000052525 (Evidence)
Entrez Gene 70891 (Evidence)
UniGene 477599
DFCI TC1600602, TC1589715
DoTS DT.40169411, DT.101705389
Consensus CDS Project CCDS50178.1, CCDS50179.1
International Mouse Phenotyping Consortium Status Spdya
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000033091 VEGA Gene Model | MGI Sequence Detail 37473 C57BL/6J ±  kb
transcript OTTMUST00000082662 VEGA | MGI Sequence Detail 933 Not Applicable 
polypeptide OTTMUSP00000044342 VEGA | MGI Sequence Detail 310 Not Applicable 

For the selected sequences
All sequences(45) RefSeq(14) UniProt(3)
Polymorphisms
SNPs within 2kb(183 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR020984 Cell cycle regulatory protein, Spy1
Protein Ontology PR:000015509 speedy protein A
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:209131 Saba R, et al., CYP26B1 promotes male germ cell differentiation by suppressing STRA8-dependent meiotic and STRA8-independent mitotic pathways. Dev Biol. 2014 May 15;389(2):173-81
All references(33)
Other
accession IDs
MGI:1922581

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory