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Fam47c Gene Detail
Summary
  • Symbol
    Fam47c
  • Name
    family with sequence similarity 47, member C
  • Synonyms
    4921509A18Rik, Fam47a-ps
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918114
    NCBI Gene: 70864
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:78737763-78739401 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 38.35 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    17 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918114
protein coding gene ChrX:78737763-78739410 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035880
protein coding gene ChrX:74603281-74604919 (+)
A/J MGP_AJ_G0035866
protein coding gene ChrX:74869529-74871167 (+)
AKR/J MGP_AKRJ_G0035784
protein coding gene ChrX:76826363-76828001 (+)
BALB/cJ MGP_BALBcJ_G0035846
protein coding gene ChrX:73796705-73798343 (+)
C3H/HeJ MGP_C3HHeJ_G0035557
protein coding gene ChrX:75026238-75027876 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036378
protein coding gene ChrX:76910564-76912202 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033208
protein coding gene ChrX:74263060-74264696 (+)
CAST/EiJ MGP_CASTEiJ_G0034845
protein coding gene ChrX:60278901-60280534 (+)
CBA/J MGP_CBAJ_G0035531
protein coding gene ChrX:78986108-78987746 (+)
DBA/2J MGP_DBA2J_G0035687
protein coding gene ChrX:74310025-74311663 (+)
FVB/NJ MGP_FVBNJ_G0035626
protein coding gene ChrX:73537786-73539362 (+)
LP/J MGP_LPJ_G0035775
protein coding gene ChrX:75438836-75440474 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035663
protein coding gene ChrX:81813456-81815085 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036404
protein coding gene ChrX:74417572-74419210 (+)
PWK/PhJ MGP_PWKPhJ_G0034543
protein coding gene ChrX:58358339-58359977 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034374
protein coding gene ChrX:61179918-61181556 (-)
WSB/EiJ MGP_WSBEiJ_G0034984
protein coding gene ChrX:73607125-73608763 (+)



Homology
more
  • Human Ortholog
    FAM47A, family with sequence similarity 47 member A
  • Vertebrate Orthologs
    6
  • Human Ortholog
    FAM47A, family with sequence similarity 47 member A
    Orthology source: HomoloGene
  • Links
    NCBI Gene ID: 158724
    neXtProt AC: NX_Q5JRC9
    UniProt: Q5JRC9

  • Chr Location
    Xp21.1; chrX:34129752-34132330 (-)  GRCh38.p7

  • Human Ortholog
    FAM47C, family with sequence similarity 47 member C
    Orthology source: HGNC
  • Links
    NCBI Gene ID: 442444
    neXtProt AC: NX_Q5HY64
    UniProt: Q5HY64

  • Chr Location
    Xp21.1; chrX:37008359-37011666 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000078315 Ensembl Gene Model | MGI Sequence Detail 1639 C57BL/6J ±  kb
transcript ENSMUST00000105110 Ensembl | MGI Sequence Detail 1639 Not Applicable  
polypeptide ENSMUSP00000137737 Ensembl | MGI Sequence Detail 430 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR032743 FAM47 family
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 2
References
more
  • Summaries
    All 17
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory