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Spata16
Gene Detail
 Symbol
Name
ID
Spata16
spermatogenesis associated 16
MGI:1918112
Synonyms 4921511F01Rik, 4930503K02Rik, Nyd-sp12, spermatogenesis-related protein
Feature Type protein coding gene
Genetic Map
Chromosome 3
10.74 cM, cytoband A3
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr3:26637620-26983212 bp, + strand
From VEGA annotation of GRCm38

  345593 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:49974  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken

Gene Tree: Spata16

Human
homologs
Human Homolog SPATA16, spermatogenesis associated 16
NCBI Gene ID 83893
neXtProt AC  NX_Q9BXB7
Human Synonyms  NYD-SP12, SPGF6
Human Chr (Location)  3q26.31; chr3:172889357-173141268 (-)  GRCh38
Disease Associations  (1) Diseases Associated with Human SPATA16
Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Gene trapped(1) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Spata16 interacts with 47 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (7 annotations)
Process cell differentiation, multicellular organismal development, ...
Component cytoplasmic vesicle, Golgi apparatus
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(13)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(13) cDNA(13)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000022026 (Evidence)
Ensembl Gene ModelENSMUSG00000039335 (Evidence)
Entrez Gene70862 (Evidence)
UniGene330943
DFCITC1585784, TC1736691
DoTSDT.101366108, DT.55220399, DT.94207752
NIA Mouse Gene IndexU003091
Consensus CDS ProjectCCDS17269.1, CCDS38403.1
International Mouse Knockout Project StatusSpata16
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000022026 VEGA Gene Model | MGI Sequence Detail 345593 C57BL/6J ±  kb
transcript OTTMUST00000052289 VEGA | MGI Sequence Detail 2022 Not Applicable 
polypeptide OTTMUSP00000024766 VEGA | MGI Sequence Detail 571 Not Applicable 

For the selected sequences
All sequences(31) RefSeq(4) UniProt(1)
Polymorphisms SNPs within 2kb(2308 from dbSNP Build 137)    SNPs within 2kb including multiple locations(2312)
Protein-related
information
ResourceIDDescription
InterPro IPR011990 Tetratricopeptide-like helical
Protein Ontology PR:000015481 spermatogenesis-associated protein 16
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
All references(28)
Other
accession IDs
MGI:1922288

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/19/2014
MGI 5.19
The Jackson Laboratory