Krtap31-1 Gene Detail

Summary

• Symbol
  Krtap31-1
• Name
  keratin associated protein 31-1
• Synonyms
  4733401H21Rik

• Feature Type
  protein coding gene
• IDs
  MGI:1918081
  NCBI Gene: 70831
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:99798746-99799716 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 63.25 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  25 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918081	protein coding gene	Chr11:99798746-99799718 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0019128	protein coding gene	Chr11:102625535-102637833 (+)
A/J	MGP_AJ_G0019095	protein coding gene	Chr11:98300773-98301745 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0019069	protein coding gene	Chr11:98822235-98827477 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0019518	protein coding gene	Chr11:105774809-105815116 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0017146	protein coding gene	Chr11:95776565-95783175 (+)
CAST/EiJ	MGP_CASTEiJ_G0018433	protein coding gene	Chr11:102505723-102517959 (+)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0018962	protein coding gene	Chr11:97903270-97904718 (+)
FVB/NJ	MGP_FVBNJ_G0018949	protein coding gene	Chr11:97381360-97382342 (+)
LP/J	MGP_LPJ_G0019029	protein coding gene	Chr11:103128640-103129612 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0018981	protein coding gene	Chr11:109881848-109891688 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0019557	protein coding gene	Chr11:101716520-101717680 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0018482	protein coding gene	Chr11:101695115-101696092 (+)

Homology

• MGI Vertebrate Homology
  Krtap31-1 stringent orthology
  1 mouse;3 rat
  
• Gene Tree
  Krtap31-1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  4
• Endonuclease-mediated
  2
• Targeted
  2
• Genomic Mutations
  2 involving Krtap31-1
• Find Mice (IMSR)
  14 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  8

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS25400.1

• Ensembl
  ENSMUSG00000070334 (Evidence)
• NCBI Gene
  70831

Representative Sequences			Length	Strain/Species
genomic	70831	NCBI Gene Model | MGI Sequence Detail	971	C57BL/6J
transcript	NM_027568	RefSeq | MGI Sequence Detail	971	C57BL/6
polypeptide	NP_081844	RefSeq | MGI Sequence Detail	177	C57BL/6

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR002494 Keratin-associated protein

Molecular
Reagents

• All nucleic 8

  cDNA 8

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:2144212

References

• Summaries
  All 25

  Phenotypes 7
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:230728 Kumar V, et al., A keratin scaffold regulates epidermal barrier formation, mitochondrial lipid composition, and activity. J Cell Biol. 2015 Dec 7;211(5):1057-75

TSS for Krtap31-1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104888	Chr11:99798744-99798748 (+)	0 bp