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Zmynd8
Gene Detail
 Symbol
Name
ID
Zmynd8
zinc finger, MYND-type containing 8
MGI:1918025
Synonyms 1110013E22Rik, 2010005I16Rik, 3632413B07Rik, mKIAA1125, Prkcbp1, RACK7, ZMYND8
Feature Type protein coding gene
Genetic Map
Chromosome 2
85.98 cM, cytoband H3
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr2:165784155-165899016 bp, - strand
From VEGA annotation of GRCm38

  114862 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:32679  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Zmynd8

Human
homologs
Human Homolog ZMYND8, zinc finger, MYND-type containing 8
NCBI Gene ID 23613
neXtProt AC  NX_Q9ULU4
Human Synonyms  PRKCBP1, PRO2893, RACK7
Human Chr (Location)  20q13.12; chr20:47209214-47356889 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(1013) : Gene trapped(1011) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Zmynd8 interacts with 258 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (5 annotations)
Process phosphorylation
Component cellular_component
Function kinase activity, metal ion binding, ...
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (31)    Tissues (30)    Images (4)
Theiler Stages: 2, 3, 4, 5, 17, 18, 23, 28
Assay TypeResults
RNA in situ 23
RT-PCR 8
cDNA source data(243)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(244) cDNA(243) Primer pair(1)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000001126 (Evidence)
Ensembl Gene ModelENSMUSG00000039671 (Evidence)
Entrez Gene228880 (Evidence)
UniGene227598
DFCITC1574131, TC1582373, TC1603143, TC1603249, TC1617828, TC1622032, TC1626030, TC1638631, TC1653575, TC1707817, TC1712136, TC1748936
DoTSDT.101219389, DT.101387049, DT.101738526, DT.103574041, DT.103579320, DT.110992255, DT.40165449, DT.533929, DT.55141191, DT.60107562, DT.94182987, DT.94183032, DT.97405877, DT.99735298, DT.99842410
NIA Mouse Gene IndexU023664
Consensus CDS ProjectCCDS57188.1, CCDS57189.1, CCDS71194.1, CCDS71195.1
International Mouse Knockout Project StatusZmynd8
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000001126 VEGA Gene Model | MGI Sequence Detail 114862 C57BL/6J ±  kb
transcript OTTMUST00000002207 VEGA | MGI Sequence Detail 6188 Not Applicable 
polypeptide OTTMUSP00000001073 VEGA | MGI Sequence Detail 1235 Not Applicable 

For the selected sequences
All sequences(247) RefSeq(99) UniProt(20)
Polymorphisms SNPs within 2kb(747 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001487 Bromodomain
InterPro IPR021931 Protein of unknown function DUF3544
InterPro IPR000313 PWWP
InterPro IPR011011 Zinc finger, FYVE/PHD-type
InterPro IPR002893 Zinc finger, MYND-type
InterPro IPR019787 Zinc finger, PHD-finger
InterPro IPR001965 Zinc finger, PHD-type
InterPro IPR019786 Zinc finger, PHD-type, conserved site
InterPro IPR013083 Zinc finger, RING/FYVE/PHD-type
Protein Ontology PR:000017694 protein kinase C-binding protein 1
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(44)
Other
accession IDs
MGI:1917081, MGI:1920968, MGI:2138895, MGI:2139133

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory