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Zmynd8
Gene Detail
Symbol

Name
ID
Zmynd8
zinc finger, MYND-type containing 8
MGI:1918025
Synonyms
1110013E22Rik, 2010005I16Rik, 3632413B07Rik, mKIAA1125, Prkcbp1, RACK7, ZMYND8
Feature Type
protein coding gene
Genetic Map
Chromosome 2
85.98 cM, cytoband H3
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr2:165784155-165899016 bp, - strand
From VEGA annotation of GRCm38

  114862 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:32679  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Zmynd8

Human
homologs
Human Homolog ZMYND8, zinc finger, MYND-type containing 8
NCBI Gene ID 23613
neXtProt AC  NX_Q9ULU4
Human Synonyms  PRKCBP1, PRO2893, RACK7
Human Chr (Location)  20q13.12; chr20:47209214-47356889 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(1012) : Gene trapped(1010) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Zmynd8 interacts with 258 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component cellular_component
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (31)    Tissues (30)    Images (4)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 23
RT-PCR 8
cDNA source data(243)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(244) cDNA(243) Primer pair(1)
Microarray probesets(5)
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000001126 VEGA Gene Model | MGI Sequence Detail 114862 C57BL/6J ±  kb
transcript OTTMUST00000002207 VEGA | MGI Sequence Detail 6188 Not Applicable 
polypeptide OTTMUSP00000001073 VEGA | MGI Sequence Detail 1235 Not Applicable 

For the selected sequences
All sequences(265) RefSeq(99) UniProt(38)
Polymorphisms
SNPs within 2kb(747 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001487 Bromodomain
InterPro IPR021931 Protein of unknown function DUF3544
InterPro IPR000313 PWWP
InterPro IPR011011 Zinc finger, FYVE/PHD-type
InterPro IPR002893 Zinc finger, MYND-type
InterPro IPR019787 Zinc finger, PHD-finger
InterPro IPR001965 Zinc finger, PHD-type
InterPro IPR019786 Zinc finger, PHD-type, conserved site
InterPro IPR013083 Zinc finger, RING/FYVE/PHD-type
Protein Ontology PR:000017694 protein kinase C-binding protein 1
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(43)
Other
accession IDs
MGI:1917081, MGI:1920968, MGI:2138895, MGI:2139133

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory