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6330403L08Rik Gene Detail
Summary
  • Symbol
    6330403L08Rik
  • Name
    RIKEN cDNA 6330403L08 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1917994
    NCBI Gene: 70744
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:138995056-139000577 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 77.69 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    2 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917994
lncRNA gene Chr5:138995056-139000577 (+)
129S1/SvImJ MGP_129S1SvImJ_G0004208
antisense lncRNA gene Chr5:143930953-143937313 (+)
A/J MGP_AJ_G0004186
antisense lncRNA gene Chr5:137841227-137846748 (+)
AKR/J MGP_AKRJ_G0004167
antisense lncRNA gene Chr5:142138559-142144080 (+)
BALB/cJ MGP_BALBcJ_G0004173
antisense lncRNA gene Chr5:139082321-139087926 (+)
C3H/HeJ MGP_C3HHeJ_G0004121
antisense lncRNA gene Chr5:142912627-142919375 (+)
C57BL/6NJ MGP_C57BL6NJ_G0004322
antisense lncRNA gene Chr5:149251621-149258685 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0003796
antisense lncRNA gene Chr5:131705518-131711038 (+)
CAST/EiJ MGP_CASTEiJ_G0004083
antisense lncRNA gene Chr5:142311138-142318720 (+)
CBA/J MGP_CBAJ_G0004115
antisense lncRNA gene Chr5:155390146-155395451 (+)
DBA/2J MGP_DBA2J_G0004131
antisense lncRNA gene Chr5:137663575-137668876 (+)
FVB/NJ MGP_FVBNJ_G0004147
antisense lncRNA gene Chr5:136751110-136756733 (+)
LP/J MGP_LPJ_G0004209
antisense lncRNA gene Chr5:144553888-144560791 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0004137
antisense lncRNA gene Chr5:158102653-158109062 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0004319
antisense lncRNA gene Chr5:141936232-141943900 (+)
PWK/PhJ MGP_PWKPhJ_G0004036
antisense lncRNA gene Chr5:136649667-136655550 (+)
SPRET/EiJ MGP_SPRETEiJ_G0003980
antisense lncRNA gene Chr5:139623125-139629831 (+)
WSB/EiJ MGP_WSBEiJ_G0004119
antisense lncRNA gene Chr5:142700205-142707733 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000075585 Ensembl Gene Model | MGI Sequence Detail 5522 C57BL/6J ±  kb
transcript ENSMUST00000187923 Ensembl | MGI Sequence Detail 5522 Not Applicable  
polypeptide Q3UHK0 UniProt | EBI | MGI Sequence Detail 319 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 5
References
more
  • Summaries
    All 14
    Phenotypes 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
07/29/2020
MGI 6.15
The Jackson Laboratory