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6330409D20Rik Gene Detail
Summary
  • Symbol
    6330409D20Rik
  • Name
    RIKEN cDNA 6330409D20 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1917980
    NCBI Gene: 70730
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:32622632-32631028 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 22.09 cM, cytoband B
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    25 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917980
 lncRNA gene Chr2:32622632-32632419 (-)
129S1/SvImJ MGP_129S1SvImJ_G0025620
 protein coding gene Chr2:31223578-31231735 (-)
A/J MGP_AJ_G0025597
 protein coding gene Chr2:29887645-29897110 (-)
AKR/J MGP_AKRJ_G0025567
 protein coding gene Chr2:30962246-30971138 (-)
BALB/cJ MGP_BALBcJ_G0025594
 protein coding gene Chr2:30007859-30016227 (-)
C3H/HeJ MGP_C3HHeJ_G0025354
 protein coding gene Chr2:30845711-30853837 (-)
C57BL/6NJ MGP_C57BL6NJ_G0026038
 protein coding gene Chr2:32160481-32168614 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0023447
 protein coding gene Chr2:28606833-28615306 (-)
CAST/EiJ MGP_CASTEiJ_G0024816
 protein coding gene Chr2:30794778-30802884 (-)
CBA/J MGP_CBAJ_G0025332
 protein coding gene Chr2:33391024-33399410 (-)
DBA/2J MGP_DBA2J_G0025465
 protein coding gene Chr2:29651376-29659549 (-)
FVB/NJ MGP_FVBNJ_G0025427
 protein coding gene Chr2:29538353-29546763 (-)
LP/J MGP_LPJ_G0025551
 protein coding gene Chr2:31096777-31106949 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0025458
 protein coding gene Chr2:33012327-33021429 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0026096
 protein coding gene Chr2:30831533-30839647 (-)
PWK/PhJ MGP_PWKPhJ_G0024564
 protein coding gene Chr2:29558619-29567456 (-)
SPRET/EiJ MGP_SPRETEiJ_G0024364
 protein coding gene Chr2:30991197-30999820 (-)
WSB/EiJ MGP_WSBEiJ_G0024885
 protein coding gene Chr2:31016190-31026521 (-)



Homology
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000009551 Ensembl Gene Model | MGI Sequence Detail 8397 C57BL/6J ±  kb
transcript ENSMUST00000009695 Ensembl | MGI Sequence Detail 1119 Not Applicable  
polypeptide Q9D3A7 UniProt | EBI | MGI Sequence Detail 162 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 4
Other
Accession IDs
less
MGI:2138786
References
more
  • Summaries
    All 16
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory