About   Help   FAQ
3830417A13Rik Gene Detail
Summary
  • Symbol
    3830417A13Rik
  • Name
    RIKEN cDNA 3830417A13 gene
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917946
    NCBI Gene: 70696
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:64173548-64178778 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 34.57 cM, cytoband A5
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    11 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917946
protein coding gene ChrX:64173548-64178779 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035765
protein coding gene ChrX:59671867-59677097 (+)
A/J MGP_AJ_G0035747
protein coding gene ChrX:59870378-59875608 (+)
AKR/J MGP_AKRJ_G0035667
protein coding gene ChrX:61499113-61504343 (+)
BALB/cJ MGP_BALBcJ_G0035734
protein coding gene ChrX:59214156-59219386 (+)
C3H/HeJ MGP_C3HHeJ_G0035437
protein coding gene ChrX:60310994-60316224 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036263
protein coding gene ChrX:61462392-61467622 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033115
protein coding gene ChrX:59266214-59271421 (+)
CAST/EiJ MGP_CASTEiJ_G0034729
protein coding gene ChrX:45849214-45854439 (+)
CBA/J MGP_CBAJ_G0035411
protein coding gene ChrX:63179752-63184982 (+)
DBA/2J MGP_DBA2J_G0035565
protein coding gene ChrX:59454802-59460032 (+)
FVB/NJ MGP_FVBNJ_G0035515
protein coding gene ChrX:58945877-58951195 (+)
LP/J MGP_LPJ_G0035653
protein coding gene ChrX:60373541-60378771 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035551
protein coding gene ChrX:64953921-64959151 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036279
protein coding gene ChrX:59616344-59621574 (+)
PWK/PhJ MGP_PWKPhJ_G0034425
protein coding gene ChrX:44074917-44080150 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034268
protein coding gene ChrX:46801771-46807021 (+)
WSB/EiJ MGP_WSBEiJ_G0034872
protein coding gene ChrX:59076185-59081415 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    4 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000031179 Ensembl Gene Model | MGI Sequence Detail 5231 C57BL/6J ±  kb
    transcript ENSMUST00000033522 Ensembl | MGI Sequence Detail 1649 Not Applicable  
    polypeptide ENSMUSP00000033522 Ensembl | MGI Sequence Detail 303 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      4 Sequences
    • InterPro Domains
      IPR002190 MAGE homology domain
      IPR041898 MAGE homology domain, winged helix WH1 motif
      IPR041899 MAGE homology domain, winged helix WH2 motif
      IPR037445 Melanoma-associated antigen
      IPR021072 Melanoma associated antigen, N-terminal
    Molecular
    Reagents
    less
    • All nucleic 13
      cDNA 13

      Microarray probesets 2
    References
    more
    • Summaries
      All 19
      Phenotypes 4
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:209956 Liakath-Ali K, et al., Novel skin phenotypes revealed by a genome-wide mouse reverse genetic screen. Nat Commun. 2014;5:3540

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
    Citing These Resources
    Funding Information
    Warranty Disclaimer & Copyright Notice
    Send questions and comments to User Support.
    last database update
    03/03/2020
    MGI 6.15
    The Jackson Laboratory