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Abraxas1 Gene Detail
Summary
  • Symbol
    Abraxas1
  • Name
    BRCA1 A complex subunit
  • Synonyms
    3830405G04Rik, 5630400M01Rik, Ccdc98, Fam175a
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917931
    NCBI Gene: 70681
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:100805192-100820965 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 48.52 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    211 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917931
protein coding gene Chr5:100804802-100845328 (-)
129S1/SvImJ MGP_129S1SvImJ_G0029793
protein coding gene Chr5:102317356-102333091 (-)
A/J MGP_AJ_G0029759
protein coding gene Chr5:98502519-98518309 (-)
AKR/J MGP_AKRJ_G0029705
protein coding gene Chr5:101741131-101757740 (-)
BALB/cJ MGP_BALBcJ_G0029769
protein coding gene Chr5:99527938-99546464 (-)
C3H/HeJ MGP_C3HHeJ_G0029492
protein coding gene Chr5:102090517-102106280 (-)
C57BL/6NJ MGP_C57BL6NJ_G0030224
protein coding gene Chr5:106566311-106583284 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0027459
protein coding gene Chr5:93744920-93761023 (-)
CAST/EiJ MGP_CASTEiJ_G0028903
protein coding gene Chr5:100756308-100772095 (-)
CBA/J MGP_CBAJ_G0029462
protein coding gene Chr5:110261394-110279688 (-)
DBA/2J MGP_DBA2J_G0029606
protein coding gene Chr5:98691397-98708525 (-)
FVB/NJ MGP_FVBNJ_G0029565
protein coding gene Chr5:97493915-97509650 (-)
LP/J MGP_LPJ_G0029694
protein coding gene Chr5:102928509-102945301 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0029594
protein coding gene Chr5:115327343-115343106 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0030257
protein coding gene Chr5:101224398-101242198 (-)
PWK/PhJ MGP_PWKPhJ_G0028621
protein coding gene Chr5:97127288-97143479 (-)
SPRET/EiJ MGP_SPRETEiJ_G0028456
protein coding gene Chr5:98896017-98911730 (-)
WSB/EiJ MGP_WSBEiJ_G0028981
protein coding gene Chr5:101560269-101577282 (-)



Homology
more
  • Human Ortholog
    ABRAXAS1, abraxas 1, BRCA1 A complex subunit
  • Vertebrate Orthologs
    10
  • Human Ortholog
    ABRAXAS1, abraxas 1, BRCA1 A complex subunit
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ABRA1, CCDC98, FAM175A
  • Links
    NCBI Gene ID: 84142
    neXtProt AC: NX_Q6UWZ7
    UniProt: Q6UWZ7

  • Chr Location
    4q21.23; chr4:83459515-83485181 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
  • All Mutations and Alleles
    6
  • Chemically induced (other)
    1
  • Gene trapped
    1
  • Radiation induced
    1
  • Spontaneous
    1
  • Targeted
    2
  • Genomic Mutations
    3 involving Abraxas1
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000035234 Ensembl Gene Model | MGI Sequence Detail 15774 C57BL/6J ±  kb
transcript ENSMUST00000200657 Ensembl | MGI Sequence Detail 1668 Not Applicable  
polypeptide ENSMUSP00000143465 Ensembl | MGI Sequence Detail 407 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 13
    cDNA 13

    Microarray probesets 4
Other
Accession IDs
less
MGI:1918690, MGI:2140928, MGI:2141021, MGI:2141115
References
more
  • Summaries
    All 33
    Gene Ontology 2
    Phenotypes 10
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory