About   Help   FAQ
Ssfa2
Gene Detail
 Symbol
Name
ID
Ssfa2
sperm specific antigen 2
MGI:1917849
Synonyms CS1, CS-1, KRAP, mKIAA1927, SPAG13
Feature Type protein coding gene
Genetic Map
Chromosome 2
47.58 cM, cytoband D
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr2:79635352-79672966 bp, + strand
From VEGA annotation of GRCm38

  37615 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:4912  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Ssfa2

Human
homologs
Human Homolog SSFA2, sperm specific antigen 2
NCBI Gene ID 6744
neXtProt AC  NX_P28290
Human Synonyms  CS1, CS-1, KRAP, SPAG13
Human Chr (Location)  2q31.3; chr2:181891716-181930738 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(8) : Gene trapped(4) Targeted(4)
Genomic Mutations involving Ssfa2 (2)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for a null mutation display decreased body weight, resistance to diet induced obesity, increased food intake, decreased adipose tissue mass, elevated metabolic rate, abnormal glucose homeostasis, and abnormal hormone levels.
 
Phenotype Images(2)
Interactions
Ssfa2 interacts with 283 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (5 annotations)
Component cytoplasm, nucleus, ...
Function actin binding, receptor binding
External Resources: FuncBase
Expression
cDNA source data(100)
External Resources: GEO   Expression Atlas
Molecular
reagents
All nucleic(100) cDNA(100)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000013318 (Evidence)
Ensembl Gene ModelENSMUSG00000027007 (Evidence)
Entrez Gene70599 (Evidence)
UniGene272881
DFCITC1576124, TC1638687, TC1702059
DoTSDT.101378816, DT.110687992, DT.488801
NIA Mouse Gene IndexU001964
Consensus CDS ProjectCCDS16170.1
International Mouse Knockout Project StatusSsfa2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000013318 VEGA Gene Model | MGI Sequence Detail 37615 C57BL/6J ±  kb
transcript OTTMUST00000032211 VEGA | MGI Sequence Detail 5168 Not Applicable 
polypeptide OTTMUSP00000014318 VEGA | MGI Sequence Detail 1252 Not Applicable 

For the selected sequences
All sequences(50) RefSeq(5) UniProt(4)
Polymorphisms SNPs within 2kb(312 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR026648 Sperm-specific antigen 2
Protein Ontology PR:000015652 sperm-specific antigen 2
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(36)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
09/09/2014
MGI 5.19
The Jackson Laboratory