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5730460C07Rik Gene Detail
Summary
  • Symbol
    5730460C07Rik
  • Name
    RIKEN cDNA 5730460C07 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1917844
    NCBI Gene: 70594
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr3:153494942-153497724 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 78.62 cM, cytoband H4
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    34 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917844
 lncRNA gene Chr3:153494942-153497724 (-)
129S1/SvImJ MGP_129S1SvImJ_G0006371
 lincRNA gene Chr3:157744078-157746862 (-)
A/J MGP_AJ_G0006364
 lincRNA gene Chr3:152004471-152007253 (-)
AKR/J MGP_AKRJ_G0006339
 lincRNA gene Chr3:156072139-156074921 (-)
BALB/cJ MGP_BALBcJ_G0006338
 lincRNA gene Chr3:151814016-151816788 (-)
C3H/HeJ MGP_C3HHeJ_G0006289
 lincRNA gene Chr3:156441747-156444529 (-)
C57BL/6NJ MGP_C57BL6NJ_G0006503
 lincRNA gene Chr3:162884909-162887691 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0005797
 lincRNA gene Chr3:146782113-146784915 (-)
CAST/EiJ MGP_CASTEiJ_G0006223
 lincRNA gene Chr3:156549804-156552601 (-)
CBA/J MGP_CBAJ_G0006272
 lincRNA gene Chr3:168754570-168757342 (-)
DBA/2J MGP_DBA2J_G0006293
 lincRNA gene Chr3:151086325-151089107 (-)
FVB/NJ MGP_FVBNJ_G0006315
 lincRNA gene Chr3:148458547-148461329 (-)
LP/J MGP_LPJ_G0006375
 lincRNA gene Chr3:159078048-159080846 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0006305
 lincRNA gene Chr3:177234235-177237009 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0006509
 lincRNA gene Chr3:155710702-155713472 (-)
PWK/PhJ MGP_PWKPhJ_G0006160
 lincRNA gene Chr3:150999655-151002411 (-)
SPRET/EiJ MGP_SPRETEiJ_G0006073
 lincRNA gene Chr3:153866976-153869775 (-)
WSB/EiJ MGP_WSBEiJ_G0006269
 lincRNA gene Chr3:156696103-156698876 (-)



Homology
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 70594 NCBI Gene Model | MGI Sequence Detail 2783 C57BL/6J ±  kb
transcript NR_045801 RefSeq | MGI Sequence Detail 1834 C57BL/6  
polypeptide Q9CYH7 UniProt | EBI | MGI Sequence Detail 101 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 2
References
more
  • Summaries
    All 11
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory