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Pnrc1
Gene Detail
Symbol

Name
ID
Pnrc1
proline-rich nuclear receptor coactivator 1
MGI:1917838
Synonyms
5730463C12Rik, B4-2, Prol2, PRR2
Feature Type
protein coding gene
Genetic Map
Chromosome 4
14.75 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr4:33245423-33290163 bp, - strand
From VEGA annotation of GRCm38

  44741 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:4960  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken

HCOP human homology predictions: PNRC1
Gene Tree: Pnrc1

Human
homologs
PNRC1, proline-rich nuclear receptor coactivator 1
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 10957
neXtProt AC: NX_Q12796

Human Synonyms: B4-2, PNAS-145, PROL2, PRR2

Human Chr (Location): 6q15; chr6:89080710-89085160 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(27) : Gene trapped(25) Targeted(2)
Incidental mutations (data from APF , CvDC )
Interactions
Pnrc1 interacts with 200 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component cellular_component
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (94)    Tissues (94)    Images (16)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 94
cDNA source data(98)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(100) cDNA(98) Primer pair(1) Other(1)
Microarray probesets(7)
Other database
links
VEGA Gene Model OTTMUSG00000004941 (Evidence)
Ensembl Gene Model ENSMUSG00000040128 (Evidence)
Entrez Gene 108767 (Evidence)
UniGene 27769
DFCI TC1575642, TC1629074
DoTS DT.482440
NIA Mouse Gene Index U024922
Consensus CDS Project CCDS18023.1
International Mouse Phenotyping Consortium Status Pnrc1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000004941 VEGA Gene Model | MGI Sequence Detail 44741 C57BL/6J ±  kb
transcript OTTMUST00000010991 VEGA | MGI Sequence Detail 1648 Not Applicable 
polypeptide OTTMUSP00000005132 VEGA | MGI Sequence Detail 297 Not Applicable 

For the selected sequences
All sequences(38) RefSeq(2) UniProt(2)
Polymorphisms
SNPs within 2kb(185 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR026780 Proline-rich nuclear receptor coactivator 1/2
Protein Ontology PR:000012951 proline-rich nuclear receptor coactivator 1
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:209112 Shimizu H, et al., The AERO system: a 3D-like approach for recording gene expression patterns in the whole mouse embryo. PLoS One. 2013;8(10):e75754
All references(32)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
05/20/2015
MGI 5.22
The Jackson Laboratory