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Zc3h11a Gene Detail
Summary
  • Symbol
    Zc3h11a
  • Name
    zinc finger CCCH type containing 11A
  • Synonyms
    1110003F06Rik, 5730454B08Rik, G630041M05Rik, mKIAA0663
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917829
    NCBI Gene: 70579
  • Alliance
    genome feature page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:133547600-133589118 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 57.94 cM, cytoband E4
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    875 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917829
 protein coding gene Chr1:133547600-133589137 (-)
129S1/SvImJ ENSMUSG00200007779
 protein coding gene Chr1:131151457-131193446 (-)
A/J ENSMUSG00195041575
 protein coding gene Chr1:130226078-130267592 (-)
AKR/J ENSMUSG00220045272
 protein coding gene Chr1:130095638-130137626 (-)
BALB/cJ ENSMUSG00180034850
 protein coding gene Chr1:130774220-130815730 (-)
C3H/HeJ ENSMUSG00175044508
 protein coding gene Chr1:130470458-130511965 (-)
C57BL/6NJ ENSMUSG00215044757
 protein coding gene Chr1:130475909-130517419 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014604
 protein coding gene Chr1:125229325-125270678 (-)
CAST/EiJ ENSTCUG00005029233
 protein coding gene Chr1:129384342-129426366 (-)
CBA/J ENSMUSG00210025285
 protein coding gene Chr1:130391128-130433101 (-)
DBA/2J ENSMUSG00185028581
 protein coding gene Chr1:134762405-134804395 (-)
FVB/NJ ENSMUSG00205020556
 protein coding gene Chr1:129727642-129769617 (-)
JF1/MsJ ENSUMUG00000044818
 protein coding gene Chr1:133910589-133952591 (-)
LP/J ENSMUSG00230038603
 protein coding gene Chr1:134309215-134350725 (-)
NOD/ShiLtJ ENSMUSG00190035667
 protein coding gene Chr1:130405328-130447304 (-)
NZO/HlLtJ ENSMUSG00225017247
 protein coding gene Chr1:138062087-138104071 (-)
PWK/PhJ ENSLUMG00010025478
 protein coding gene Chr1:129535180-129577464 (-)
SPRET/EiJ ENSMSPG00010044711
 protein coding gene Chr1:132341157-132375880 (-)
WSB/EiJ ENSIUOG00005042981
 protein coding gene Chr1:130143460-130185200 (-)



Homology
more
  • Human Ortholog
    ZC3H11A, zinc finger CCCH-type containing 11A
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ZC3H11A, zinc finger CCCH-type containing 11A
  • Synonyms
    ZC3HDC11A
  • Links
    NCBI Gene ID: 9877
    UniProt: O75152

  • Chr Location
    1q32.1; chr1:203795623-203854999 (+)  GRCh38
  • Human Ortholog
    ZC3H11B, zinc finger CCCH-type containing 11B
  • Synonyms
    ZC3HDC11B
  • Links
    NCBI Gene ID: 643136
    UniProt: A0A1B0GTU1

  • Chr Location
    1q41; chr1:219608012-219613105 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    14 phenotypes from 1 allele in 1 genetic background
    12 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    12
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    613
  • Tissues
    7
  • cDNA Data
    23
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000102976 Ensembl Gene Model | MGI Sequence Detail 41519 C57BL/6J ±  kb
    transcript ENSMUST00000191896 Ensembl | MGI Sequence Detail 4396 Not Applicable  
    polypeptide ENSMUSP00000141255 Ensembl | MGI Sequence Detail 792 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      9 Sequences
    • InterPro Domains
      IPR041686 Zinc-finger CCCH domain
      IPR000571 Zinc finger, CCCH-type
      IPR036855 Zinc finger, CCCH-type superfamily
    • GlyGen
      Q6NZF1 1 site, 1 O-linked glycan (1 site)
    Molecular
    Reagents
    less
    • All nucleic 24
      cDNA 24
      Antibodies 2

      Microarray probesets 12
    Other
    Accession IDs
    less
    MGI:1923538, MGI:2444045
    References
    more
    • Summaries
      All 42
      Developmental Gene Expression 2
      Gene Ontology 7
      Phenotypes 12
    • Earliest
      J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    09/01/2026
    MGI 6.24     		The Jackson Laboratory