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Zc3h11a Gene Detail
Summary
  • Symbol
    Zc3h11a
  • Name
    zinc finger CCCH type containing 11A
  • Synonyms
    1110003F06Rik, 5730454B08Rik, G630041M05Rik, mKIAA0663
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917829
    NCBI Gene: 70579
  • Gene Overview
    MyGene.info: ZC3H11A
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:133619868-133661399 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 57.94 cM, cytoband E4
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    178 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917829
protein coding gene Chr1:133619862-133661399 (-)
129S1/SvImJ MGP_129S1SvImJ_G0016489
protein coding gene Chr1:137212699-137261706 (-)
A/J MGP_AJ_G0016472
protein coding gene Chr1:132078157-132120544 (-)
AKR/J MGP_AKRJ_G0016438
protein coding gene Chr1:136014070-136054246 (-)
BALB/cJ MGP_BALBcJ_G0016432
protein coding gene Chr1:132411445-132454781 (-)
C3H/HeJ MGP_C3HHeJ_G0016258
protein coding gene Chr1:136105061-136151088 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016893
protein coding gene Chr1:142244163-142293574 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014604
protein coding gene Chr1:125229325-125270678 (-)
CAST/EiJ MGP_CASTEiJ_G0015838
protein coding gene Chr1:135145428-135189987 (-)
CBA/J MGP_CBAJ_G0016232
protein coding gene Chr1:147137602-147179074 (-)
DBA/2J MGP_DBA2J_G0016337
protein coding gene Chr1:131093664-131136307 (-)
FVB/NJ MGP_FVBNJ_G0016336
protein coding gene Chr1:129713400-129756106 (-)
LP/J MGP_LPJ_G0016408
protein coding gene Chr1:138498583-138543898 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0016361
protein coding gene Chr1:152881297-152934121 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016929
protein coding gene Chr1:135723381-135770821 (-)
PWK/PhJ MGP_PWKPhJ_G0015624
protein coding gene Chr1:130093992-130137698 (-)
SPRET/EiJ MGP_SPRETEiJ_G0015411
protein coding gene Chr1:134704443-134749817 (-)
WSB/EiJ MGP_WSBEiJ_G0015902
protein coding gene Chr1:135750764-135797156 (-)



Homology
more
  • Human Ortholog
    ZC3H11A, zinc finger CCCH-type containing 11A
  • Vertebrate Orthologs
    10
  • Human Ortholog
    ZC3H11A, zinc finger CCCH-type containing 11A
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ZC3HDC11A
  • Links
    NCBI Gene ID: 9877
    neXtProt AC: NX_O75152
    UniProt: O75152

  • Chr Location
    1q32.1; chr1:203795537-203854128 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 8888
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: ZC3H11A
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 70579 NCBI Gene Model | MGI Sequence Detail 41532 C57BL/6J ±  kb
transcript NM_001357228 RefSeq | MGI Sequence Detail 4829 C57BL/6  
polypeptide Q6NZF1 UniProt | EBI | MGI Sequence Detail 792 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    9 Sequences
  • InterPro Domains
    IPR000571 Zinc finger, CCCH-type
    IPR036855 Zinc finger, CCCH-type superfamily
Molecular
Reagents
less
  • All nucleic 24
    cDNA 24

    Microarray probesets 12
Other
Accession IDs
less
MGI:1923538, MGI:2444045
References
more
  • Summaries
    All 32
    Gene Ontology 5
    Phenotypes 7
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory