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Cpne3 Gene Detail
Summary
  • Symbol
    Cpne3
  • Name
    copine III
  • Synonyms
    5430428M23Rik, 5730450C07Rik, CPN3, PRO1071
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917818
    NCBI Gene: 70568
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:19519254-19570108 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 7.53 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    255 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917818
protein coding gene Chr4:19519248-19570108 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028080
protein coding gene Chr4:16538501-16596874 (-)
A/J MGP_AJ_G0028038
protein coding gene Chr4:16080593-16131509 (-)
AKR/J MGP_AKRJ_G0028003
protein coding gene Chr4:16427365-16483966 (-)
BALB/cJ MGP_BALBcJ_G0028049
protein coding gene Chr4:16052270-16103891 (-)
C3H/HeJ MGP_C3HHeJ_G0027779
protein coding gene Chr4:16535212-16589657 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028492
protein coding gene Chr4:17202207-17258904 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025834
protein coding gene Chr4:14879356-14926186 (-)
CAST/EiJ MGP_CASTEiJ_G0027234
protein coding gene Chr4:16348762-16402177 (-)
CBA/J MGP_CBAJ_G0027752
protein coding gene Chr4:17693943-17757158 (-)
DBA/2J MGP_DBA2J_G0027895
protein coding gene Chr4:15888684-15939761 (-)
FVB/NJ MGP_FVBNJ_G0027861
protein coding gene Chr4:15614785-15663864 (-)
LP/J MGP_LPJ_G0028004
protein coding gene Chr4:16576533-16631092 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027894
protein coding gene Chr4:18730839-18787799 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028551
protein coding gene Chr4:16320423-16372188 (-)
PWK/PhJ MGP_PWKPhJ_G0026954
protein coding gene Chr4:15782543-15838650 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026783
protein coding gene Chr4:16191977-16244919 (-)
WSB/EiJ MGP_WSBEiJ_G0027311
protein coding gene Chr4:16382178-16433081 (-)



Homology
more
  • Human Ortholog
    CPNE3, copine 3
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CPNE3, copine 3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CPN3, PRO1071
  • Links
    NCBI Gene ID: 8895
    neXtProt AC: NX_O75131
    UniProt: O75131

  • Chr Location
    8q21.3; chr8:86514423-86561498 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 20839
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CPNE3
  • Protein SuperFamily
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028228 Ensembl Gene Model | MGI Sequence Detail 50855 C57BL/6J ±  kb
transcript ENSMUST00000029885 Ensembl | MGI Sequence Detail 5648 Not Applicable  
polypeptide ENSMUSP00000029885 Ensembl | MGI Sequence Detail 533 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 103
    cDNA 103

    Microarray probesets 7
Other
Accession IDs
less
MGI:1918602, MGI:2140696
References
more
  • Summaries
    All 36
    Developmental Gene Expression 2
    Gene Ontology 4
    Phenotypes 7
  • Earliest
    J:86882 Creutz CE, et al., The copines, a novel class of C2 domain-containing, calcium-dependent, phospholipid-binding proteins conserved from Paramecium to humans. J Biol Chem. 1998 Jan 16;273(3):1393-402
  • Latest
    J:198011 Eom T, et al., NOVA-dependent regulation of cryptic NMD exons controls synaptic protein levels after seizure. Elife. 2013;2:e00178

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory