5730435O14Rik Gene Detail

Summary

• Symbol
  5730435O14Rik
• Name
  RIKEN cDNA 5730435O14 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1917788
  NCBI Gene: 70538
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr10:41444012-41452472 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 22.52 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  61 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917788	lncRNA gene	Chr10:41444012-41452472 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015135	unclassified non-coding RNA gene	Chr10:40210846-40219328 (+)
A/J	MGP_AJ_G0015109	unclassified non-coding RNA gene	Chr10:39093424-39101884 (+)
AKR/J	MGP_AKRJ_G0015072	unclassified non-coding RNA gene	Chr10:39683103-39691563 (+)
BALB/cJ	MGP_BALBcJ_G0015072	unclassified non-coding RNA gene	Chr10:39161917-39170377 (+)
C3H/HeJ	MGP_C3HHeJ_G0014895	unclassified non-coding RNA gene	Chr10:40005697-40014157 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015528	unclassified non-coding RNA gene	Chr10:41439008-41447468 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013274	unclassified non-coding RNA gene	Chr10:37030584-37039072 (+)
CAST/EiJ	MGP_CASTEiJ_G0014449	unclassified non-coding RNA gene	Chr10:40199795-40208231 (+)
CBA/J	MGP_CBAJ_G0014874	unclassified non-coding RNA gene	Chr10:43335052-43343512 (+)
DBA/2J	MGP_DBA2J_G0014967	unclassified non-coding RNA gene	Chr10:38597807-38606257 (+)
FVB/NJ	MGP_FVBNJ_G0014978	unclassified non-coding RNA gene	Chr10:38096905-38105392 (+)
LP/J	MGP_LPJ_G0015049	unclassified non-coding RNA gene	Chr10:40207278-40215750 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015005	unclassified non-coding RNA gene	Chr10:44145002-44154854 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015567	unclassified non-coding RNA gene	Chr10:39660331-39668791 (+)
PWK/PhJ	MGP_PWKPhJ_G0014241	unclassified non-coding RNA gene	Chr10:38474750-38483374 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014029	unclassified non-coding RNA gene	Chr10:39476792-39485262 (+)
WSB/EiJ	MGP_WSBEiJ_G0014552	unclassified non-coding RNA gene	Chr10:39987467-39995926 (+)

Homology

• Gene Tree
  5730435O14Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 5730435O14Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000091370 (Evidence)
• NCBI Gene
  70538

Representative Sequences			Length	Strain/Species
genomic	70538	NCBI Gene Model | MGI Sequence Detail	8461	C57BL/6J
transcript	NR_045341	RefSeq | MGI Sequence Detail	617	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 14

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573