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Stambp Gene Detail
Summary
  • Symbol
    Stambp
  • Name
    STAM binding protein
  • Synonyms
    5330424L14Rik, 5730422L11Rik, Amsh
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917777
    NCBI Gene: 70527
  • Gene Overview
    MyGene.info: STAMBP
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:83543211-83572729 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 35.94 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    235 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917777
protein coding gene Chr6:83543206-83575770 (-)
129S1/SvImJ MGP_129S1SvImJ_G0030934
protein coding gene Chr6:84549672-84579748 (-)
A/J MGP_AJ_G0030903
protein coding gene Chr6:81340241-81370282 (-)
AKR/J MGP_AKRJ_G0030831
protein coding gene Chr6:83692140-83721509 (-)
BALB/cJ MGP_BALBcJ_G0030913
protein coding gene Chr6:81362719-81390036 (-)
C3H/HeJ MGP_C3HHeJ_G0030797
protein coding gene Chr6:100666671-100697232 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031373
protein coding gene Chr6:86877707-86910035 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0028559
protein coding gene Chr6:79691927-79718163 (-)
CAST/EiJ MGP_CASTEiJ_G0030022
protein coding gene Chr6:83712571-83742411 (-)
CBA/J MGP_CBAJ_G0030600
protein coding gene Chr6:90283303-90331611 (-)
DBA/2J MGP_DBA2J_G0030753
protein coding gene Chr6:80655312-80682979 (-)
FVB/NJ MGP_FVBNJ_G0030706
protein coding gene Chr6:79864033-79890783 (-)
LP/J MGP_LPJ_G0030832
protein coding gene Chr6:84561375-84595386 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0030742
protein coding gene Chr6:94589274-94617152 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0031397
protein coding gene Chr6:83503362-83534138 (-)
PWK/PhJ MGP_PWKPhJ_G0029737
protein coding gene Chr6:79561357-79588152 (-)
SPRET/EiJ MGP_SPRETEiJ_G0029565
protein coding gene Chr6:82353366-82382417 (-)
WSB/EiJ MGP_WSBEiJ_G0030103
protein coding gene Chr6:83938288-83967197 (-)



Homology
more
  • Human Ortholog
    STAMBP, STAM binding protein
  • Vertebrate Orthologs
    11
  • Human Ortholog
    STAMBP, STAM binding protein
    Orthology source: HomoloGene, HGNC
  • Synonyms
    AMSH, MICCAP
  • Links
    NCBI Gene ID: 10617
    neXtProt AC: NX_O95630
    UniProt: O95630

  • Chr Location
    2p13.1; chr2:73828911-73873656 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 4719
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;2 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: STAMBP
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotypes from 1 allele in 1 genetic background
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele die of starvation at weaning exhibiting postnatal growth retardation, limb-clasping, a hypocellular cerebral cortex, and severe loss of hippocampal CA1 neurons accompanied by apoptosis; one-third of mutant mice display blepharoptosis.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000006906 Ensembl Gene Model | MGI Sequence Detail 29519 C57BL/6J ±  kb
    transcript ENSMUST00000206400 Ensembl | MGI Sequence Detail 2144 Not Applicable  
    polypeptide ENSMUSP00000145871 Ensembl | MGI Sequence Detail 424 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 67
      cDNA 67

      Microarray probesets 5
    Other
    Accession IDs
    less
    MGI:1925525, MGI:2141643
    References
    more
    • Summaries
      All 40
      Developmental Gene Expression 4
      Gene Ontology 8
      Phenotypes 9
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory