5730420D15Rik Gene Detail

Summary

• Symbol
  5730420D15Rik
• Name
  RIKEN cDNA 5730420D15 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1917773
  NCBI Gene: 70523
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr10:95253237-95264502 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 49.37 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  337 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917773	lncRNA gene	Chr10:95252845-95279547 (+)
129S1/SvImJ	ENSMUSG00200020128	lncRNA gene	Chr10:91768761-91795084 (+)
A/J	ENSMUSG00195015892	lncRNA gene	Chr10:92194866-92221195 (+)
AKR/J	ENSMUSG00220026705	lncRNA gene	Chr10:91756584-91782908 (+)
BALB/cJ	ENSMUSG00180009344	lncRNA gene	Chr10:92197440-92223767 (+)
C3H/HeJ	ENSMUSG00175005919	lncRNA gene	Chr10:92103334-92129662 (+)
C57BL/6NJ	ENSMUSG00215006795	lncRNA gene	Chr10:91784468-91810784 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004668	lincRNA gene	Chr10:89119461-89130311 (+)
CAST/EiJ	ENSTCUG00005035566	lncRNA gene	Chr10:91476673-91502703 (+)
CBA/J	ENSMUSG00210023167	lncRNA gene	Chr10:91933153-91959480 (+)
DBA/2J	ENSMUSG00185043298	lncRNA gene	Chr10:92145158-92171481 (+)
FVB/NJ	ENSMUSG00205019863	lncRNA gene	Chr10:91843658-91869961 (+)
JF1/MsJ	ENSUMUG00000027771	lncRNA gene	Chr10:93570618-93595938 (+)
LP/J	ENSMUSG00230022437	lncRNA gene	Chr10:94057443-94083766 (+)
NOD/ShiLtJ	ENSMUSG00190019497	lncRNA gene	Chr10:92182367-92208691 (+)
NZO/HlLtJ	ENSMUSG00225022162	lncRNA gene	Chr10:98299700-98326034 (+)
PWK/PhJ	ENSLUMG00010005955	lncRNA gene	Chr10:91827814-91853117 (+)
SPRET/EiJ	ENSMSPG00010010786	lncRNA gene	Chr10:93472179-93498660 (+)
WSB/EiJ	ENSIUOG00005013265	lncRNA gene	Chr10:91880921-91907242 (+)

Homology

• Gene Tree
  5730420D15Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  1
• Gene trapped
  3
• Transposon induced
  1
• Genomic Mutations
  2 involving 5730420D15Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  2

• Ensembl
  ENSMUSG00000097766 (Evidence)
• NCBI Gene
  70523

Representative Sequences			Length	Strain/Species
genomic	70523	NCBI Gene Model | MGI Sequence Detail	11266	C57BL/6J
transcript	NR_045338	RefSeq | MGI Sequence Detail	1182	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 19

  Phenotypes 8
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for 5730420D15Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95358	Chr10:95251453-95251489 (+)	-1,766 bp
Tssr95359	Chr10:95252845-95252855 (+)	-387 bp
Tssr95360	Chr10:95253097-95253129 (+)	-124 bp
Tssr95361	Chr10:95253214-95253247 (+)	-6 bp
Tssr95362	Chr10:95254544-95254549 (+)	1,310 bp