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5730405O15Rik Gene Detail
Summary
  • Symbol
    5730405O15Rik
  • Name
    RIKEN cDNA 5730405O15 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1917739
    NCBI Gene: 70489
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:13042015-13045295 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 7.92 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    7 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917739
lncRNA gene ChrX:13042015-13045297 (+)
129S1/SvImJ MGP_129S1SvImJ_G0015773
unclassified non-coding RNA gene ChrX:7891206-7894487 (+)
A/J MGP_AJ_G0015750
unclassified non-coding RNA gene ChrX:7979664-7982945 (+)
AKR/J MGP_AKRJ_G0015712
unclassified non-coding RNA gene ChrX:8248846-8252127 (+)
BALB/cJ MGP_BALBcJ_G0015711
unclassified non-coding RNA gene ChrX:7826551-7829832 (+)
C3H/HeJ MGP_C3HHeJ_G0015531
unclassified non-coding RNA gene ChrX:7982130-7985402 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016165
unclassified non-coding RNA gene ChrX:8086519-8089825 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0013889
unclassified non-coding RNA gene ChrX:6899855-6903265 (+)
CAST/EiJ MGP_CASTEiJ_G0015086
unclassified non-coding RNA gene ChrX:7742846-7746103 (+)
CBA/J MGP_CBAJ_G0015511
unclassified non-coding RNA gene ChrX:8505417-8508698 (+)
DBA/2J MGP_DBA2J_G0015609
unclassified non-coding RNA gene ChrX:7812805-7816287 (+)
FVB/NJ MGP_FVBNJ_G0015615
unclassified non-coding RNA gene ChrX:7651636-7654917 (+)
LP/J MGP_LPJ_G0015691
unclassified non-coding RNA gene ChrX:8072332-8075607 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0015638
unclassified non-coding RNA gene ChrX:8404609-8407887 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016209
unclassified non-coding RNA gene ChrX:7810597-7814413 (+)
PWK/PhJ MGP_PWKPhJ_G0014868
unclassified non-coding RNA gene ChrX:7326680-7330046 (+)
SPRET/EiJ MGP_SPRETEiJ_G0014655
unclassified non-coding RNA gene ChrX:7922821-7926913 (+)
WSB/EiJ MGP_WSBEiJ_G0015190
unclassified non-coding RNA gene ChrX:7872627-7875905 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 70489 NCBI Gene Model | MGI Sequence Detail 3281 C57BL/6J ±  kb
transcript NR_038158 RefSeq | MGI Sequence Detail 887 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 1
References
more
  • Summaries
    All 15
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
11/10/2020
MGI 6.16
The Jackson Laboratory