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5730405O15Rik Gene Detail
Summary
  • Symbol
    5730405O15Rik
  • Name
    RIKEN cDNA 5730405O15 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1917739
    NCBI Gene: 70489
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:13042015-13045295 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 7.92 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    7 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917739
lncRNA gene ChrX:13042015-13045297 (+)
129S1/SvImJ MGP_129S1SvImJ_G0015773
unclassified non-coding RNA gene ChrX:7891206-7894487 (+)
A/J MGP_AJ_G0015750
unclassified non-coding RNA gene ChrX:7979664-7982945 (+)
AKR/J MGP_AKRJ_G0015712
unclassified non-coding RNA gene ChrX:8248846-8252127 (+)
BALB/cJ MGP_BALBcJ_G0015711
unclassified non-coding RNA gene ChrX:7826551-7829832 (+)
C3H/HeJ MGP_C3HHeJ_G0015531
unclassified non-coding RNA gene ChrX:7982130-7985402 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016165
unclassified non-coding RNA gene ChrX:8086519-8089825 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0013889
unclassified non-coding RNA gene ChrX:6899855-6903265 (+)
CAST/EiJ MGP_CASTEiJ_G0015086
unclassified non-coding RNA gene ChrX:7742846-7746103 (+)
CBA/J MGP_CBAJ_G0015511
unclassified non-coding RNA gene ChrX:8505417-8508698 (+)
DBA/2J MGP_DBA2J_G0015609
unclassified non-coding RNA gene ChrX:7812805-7816287 (+)
FVB/NJ MGP_FVBNJ_G0015615
unclassified non-coding RNA gene ChrX:7651636-7654917 (+)
LP/J MGP_LPJ_G0015691
unclassified non-coding RNA gene ChrX:8072332-8075607 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0015638
unclassified non-coding RNA gene ChrX:8404609-8407887 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016209
unclassified non-coding RNA gene ChrX:7810597-7814413 (+)
PWK/PhJ MGP_PWKPhJ_G0014868
unclassified non-coding RNA gene ChrX:7326680-7330046 (+)
SPRET/EiJ MGP_SPRETEiJ_G0014655
unclassified non-coding RNA gene ChrX:7922821-7926913 (+)
WSB/EiJ MGP_WSBEiJ_G0015190
unclassified non-coding RNA gene ChrX:7872627-7875905 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Expression
less
  • cDNA Data
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 70489 NCBI Gene Model | MGI Sequence Detail 3281 C57BL/6J ±  kb
transcript NR_038158 RefSeq | MGI Sequence Detail 887 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 1
References
more
  • Summaries
    All 15
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
02/11/2020
MGI 6.14
The Jackson Laboratory