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Rprd1b Gene Detail
Summary
  • Symbol
    Rprd1b
  • Name
    regulation of nuclear pre-mRNA domain containing 1B
  • Synonyms
    2610304G08Rik, 2810446G03Rik, Crept
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917720
    NCBI Gene: 70470
Location & Maps
more
  • Sequence Map
    Chr2:158028497-158132297 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      103801 bp   ±  kb flank

  • Genome Browsers
Homology
more
  • Human Ortholog
    RPRD1B, regulation of nuclear pre-mRNA domain containing 1B
  • Vertebrate Orthologs
    10
  • Human Ortholog
    RPRD1B, regulation of nuclear pre-mRNA domain containing 1B
    Orthology source: HGNC, HomoloGene
  • Synonyms
    C20orf77, CREPT, dJ1057B20.2, NET60
  • Links
    NCBI Gene ID: 58490
    neXtProt AC: NX_Q9NQG5

  • Chr Location
    20q11.23; chr20:38033487-38092364 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryogenesis
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
tumorigenesis
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000015886 VEGA Gene Model | MGI Sequence Detail 103801 C57BL/6J ±  kb
transcript OTTMUST00000037767 VEGA | MGI Sequence Detail 4283 Not Applicable  
polypeptide OTTMUSP00000016940 VEGA | MGI Sequence Detail 326 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    653 from dbSNP Build 142
Protein
Information
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  • UniProt
    4 Sequences
  • Protein Ontology
    PR:000031060 regulation of nuclear pre-mRNA domain-containing protein 1B
  • InterPro Domains
    IPR032337 Cell-cycle alteration and expression-elevated protein in tumour
    IPR006569 CID domain
    IPR008942 ENTH/VHS
    IPR006903 RNA polymerase II-binding domain
Molecular
Reagents
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  • All nucleic 79
    cDNA 77
    Primer pair 1
    Other 1

    Microarray probesets 7
Other
Accession IDs
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MGI:1920005
References
more
  • Summaries
    All 30
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:180279 Lu D, et al., CREPT Accelerates Tumorigenesis by Regulating the Transcription of Cell-Cycle-Related Genes. Cancer Cell. 2012 Jan 17;21(1):92-104

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
05/17/2016
MGI 6.03
The Jackson Laboratory