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Rprd1b Gene Detail
Summary
  • Symbol
    Rprd1b
  • Name
    regulation of nuclear pre-mRNA domain containing 1B
  • Synonyms
    2610304G08Rik, 2810446G03Rik, Crept
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917720
    NCBI Gene: 70470
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:158028489-158078207 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 78.72 cM, cytoband H2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    303 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917720
protein coding gene Chr2:158028489-158132297 (+)
129S1/SvImJ MGP_129S1SvImJ_G0026788
protein coding gene Chr2:163074654-163187858 (+)
A/J MGP_AJ_G0026754
protein coding gene Chr2:156543147-156651393 (+)
AKR/J MGP_AKRJ_G0026725
protein coding gene Chr2:161164652-161271618 (+)
BALB/cJ MGP_BALBcJ_G0026763
protein coding gene Chr2:156847771-156953160 (+)
C3H/HeJ MGP_C3HHeJ_G0026505
protein coding gene Chr2:161470821-161580724 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027212
protein coding gene Chr2:167923006-168044767 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024582
protein coding gene Chr2:149988418-150094863 (+)
CAST/EiJ MGP_CASTEiJ_G0025967
protein coding gene Chr2:161828095-161938575 (+)
CBA/J MGP_CBAJ_G0026482
protein coding gene Chr2:173956739-174079323 (+)
DBA/2J MGP_DBA2J_G0026620
protein coding gene Chr2:155719146-155824354 (+)
FVB/NJ MGP_FVBNJ_G0026587
protein coding gene Chr2:154119641-154227216 (+)
LP/J MGP_LPJ_G0026723
protein coding gene Chr2:163158814-163273509 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026608
protein coding gene Chr2:177778327-177891238 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027268
protein coding gene Chr2:160970706-161084806 (+)
PWK/PhJ MGP_PWKPhJ_G0025701
protein coding gene Chr2:155236719-155342836 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025504
protein coding gene Chr2:159899301-160011719 (+)
WSB/EiJ MGP_WSBEiJ_G0026037
protein coding gene Chr2:161878085-161987457 (+)



Homology
more
  • Human Ortholog
    RPRD1B, regulation of nuclear pre-mRNA domain containing 1B
  • Vertebrate Orthologs
    10
  • Human Ortholog
    RPRD1B, regulation of nuclear pre-mRNA domain containing 1B
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C20orf77, CREPT, dJ1057B20.2, K-H, Kub5-Hera, NET60
  • Links
    NCBI Gene ID: 58490
    neXtProt AC: NX_Q9NQG5
    UniProt: Q9NQG5

  • Chr Location
    20q11.23; chr20:38033462-38092366 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 41426
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: RPRD1B
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 70470 NCBI Gene Model | MGI Sequence Detail 49719 C57BL/6J ±  kb
transcript NM_001291135 RefSeq | MGI Sequence Detail 4616 C57BL/6  
polypeptide Q9CSU0 UniProt | EBI | MGI Sequence Detail 326 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 80
    cDNA 78
    Primer pair 1
    Other 1

    Microarray probesets 7
Other
Accession IDs
less
MGI:1920005
References
more
  • Summaries
    All 32
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:240153 Ichise H, et al., Establishment of a tamoxifen-inducible Cre-driver mouse strain for widespread and temporal genetic modification in adult mice. Exp Anim. 2016 Jul 29;65(3):231-44

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory