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Taf15
Gene Detail
 Symbol
Name
ID
Taf15
TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor
MGI:1917689
Synonyms 2610111C21Rik, 68kDa, Taf2n, TAFII68
Feature Type protein coding gene
Genetic Map
Chromosome 11
50.49 cM, cytoband B5
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr11:83473086-83506743 bp, + strand
From VEGA annotation of GRCm38

  33658 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:131088  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Protein SuperFamily: RNA-binding protein, EWS type
Gene Tree: Taf15

Human
homologs
Human Homolog TAF15, TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa
NCBI Gene ID 8148
neXtProt AC  NX_Q92804
Human Synonyms  Npl3, RBP56, TAF2N, TAFII68
Human Chr (Location)  17q11.1-q11.2; chr17:35809455-35847242 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human TAF15
Alleles
and
phenotypes
All alleles(34) : Targeted(2) Gene trapped(32)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process biological_process
Component cytoplasm, nucleus
Function poly(A) RNA binding
External Resources: FuncBase
Expression
Literature Summary: (5 records)
Data Summary: Results (57)    Tissues (47)    Images (6)
Theiler Stages: 21, 22, 23, 28
Assay TypeResults
RNA in situ 45
Western blot 10
RT-PCR 2
cDNA source data(35)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(39) Genomic(1) cDNA(37) Primer pair(1)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000000917 (Evidence)
Ensembl Gene ModelENSMUSG00000020680 (Evidence)
Entrez Gene70439 (Evidence)
UniGene181050
DFCITC1582966, TC1599626, TC1600726, TC1619534
DoTSDT.101163027, DT.40135572, DT.40162341, DT.40166404
NIA Mouse Gene IndexU013090
Consensus CDS ProjectCCDS25168.1
International Mouse Knockout Project StatusTaf15
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000000917 VEGA Gene Model | MGI Sequence Detail 33658 C57BL/6J ±  kb
transcript OTTMUST00000001784 VEGA | MGI Sequence Detail 2068 Not Applicable 
polypeptide OTTMUSP00000000854 VEGA | MGI Sequence Detail 557 Not Applicable 

For the selected sequences
All sequences(52) RefSeq(12) UniProt(4)
Polymorphisms SNPs within 2kb(82 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR012677 Nucleotide-binding, alpha-beta plait
InterPro IPR000504 RNA recognition motif domain
InterPro IPR001876 Zinc finger, RanBP2-type
Protein Ontology PR:000016019 TATA-binding protein-associated factor 2N
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:181994 Kamileri I, et al., Defective transcription initiation causes postnatal growth failure in a mouse model of nucleotide excision repair (NER) progeria. Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):2995-3000
All references(42)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
04/08/2014
MGI 5.17
The Jackson Laboratory