Speer5-ps1 Pseudogene Detail

Summary

• Symbol
  Speer5-ps1
• Name
  spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1
• Synonyms
  1700007C10Rik, SPEER-5

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:1917615
  NCBI Gene: 70365
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:44046443-44095581 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 23.24 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1356 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917615	pseudogene	Chr10:44041515-44095645 (+)
129S1/SvImJ	ENSMUSG00200007751	pseudogene	Chr10:40940449-40995862 (+)
A/J	ENSMUSG00195003102	pseudogene	Chr10:41213492-41263169 (+)
AKR/J	ENSMUSG00220006632	pseudogene	Chr10:40899329-40949023 (+)
BALB/cJ	ENSMUSG00180012173	pseudogene	Chr10:41302759-41352439 (+)
C3H/HeJ	ENSMUSG00175010727	pseudogene	Chr10:41090186-41139859 (+)
C57BL/6NJ	ENSMUSG00215002442	pseudogene	Chr10:40840232-40889906 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008883	pseudogene	Chr10:41288304-41336499 (+)
CBA/J	ENSMUSG00210008312	pseudogene	Chr10:40985862-41035530 (+)
DBA/2J	ENSMUSG00185003374	pseudogene	Chr10:41137372-41187061 (+)
FVB/NJ	ENSMUSG00205005213	pseudogene	Chr10:41052800-41102488 (+)
JF1/MsJ	ENSUMUG00000028934	pseudogene	Chr10:40934948-40989747 (+)
LP/J	ENSMUSG00230006339	pseudogene	Chr10:42938460-42993868 (+)
NOD/ShiLtJ	ENSMUSG00190005692	pseudogene	Chr10:41265604-41315294 (+)
NZO/HlLtJ	ENSMUSG00225018807	pseudogene	Chr10:47227265-47276939 (+)
PWK/PhJ	ENSLUMG00010004836	pseudogene	Chr10:41043996-41093827 (+)
SPRET/EiJ	ENSMSPG00010013570	pseudogene	Chr10:42106214-42126326 (+)
WSB/EiJ	ENSIUOG00005014994	pseudogene	Chr10:40818455-40868567 (+)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Speer5-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  3

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  2

• Ensembl
  ENSMUSG00000091358 (Evidence), ENSMUSG00000121674 (Evidence)
• NCBI Gene
  70365

Representative Sequences			Length	Strain/Species
genomic	70365	NCBI Gene Model | MGI Sequence Detail	49139	C57BL/6J
transcript	NR_001582	RefSeq | MGI Sequence Detail	1432	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 17

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:223994 Zangrando J, et al., Identification of candidate long non-coding RNAs in response to myocardial infarction. BMC Genomics. 2014;15:460

TSS for Speer5-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93162	Chr10:44046438-44046463 (+)	8 bp