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Basp1 Gene Detail
Summary
  • Symbol
    Basp1
  • Name
    brain abundant, membrane attached signal protein 1
  • Synonyms
    2610024P12Rik, CAP23, CAP-23, Ckap3
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917600
    NCBI Gene: 70350
  • Gene Overview
    MyGene.info: BASP1
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:25363277-25413764 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 9.16 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    427 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917600
protein coding gene Chr15:25363277-25413764 (-)
129S1/SvImJ MGP_129S1SvImJ_G0021748
protein coding gene Chr15:23344465-23398618 (-)
A/J MGP_AJ_G0021708
protein coding gene Chr15:22467018-22517728 (-)
AKR/J MGP_AKRJ_G0021686
protein coding gene Chr15:22949801-23005213 (-)
BALB/cJ MGP_BALBcJ_G0021715
protein coding gene Chr15:22448185-22499679 (-)
C3H/HeJ MGP_C3HHeJ_G0021491
protein coding gene Chr15:22991379-23044191 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022154
protein coding gene Chr15:24353400-24406620 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0019694
protein coding gene Chr15:20781409-20831781 (-)
CAST/EiJ MGP_CASTEiJ_G0021007
protein coding gene Chr15:23334096-23385460 (-)
CBA/J MGP_CBAJ_G0021460
protein coding gene Chr15:25137942-25191671 (-)
DBA/2J MGP_DBA2J_G0021584
protein coding gene Chr15:22228974-22279109 (-)
FVB/NJ MGP_FVBNJ_G0021562
protein coding gene Chr15:21793136-21844122 (-)
LP/J MGP_LPJ_G0021652
protein coding gene Chr15:23213457-23267531 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0021587
protein coding gene Chr15:27844991-27899594 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022177
protein coding gene Chr15:23148331-23202527 (-)
PWK/PhJ MGP_PWKPhJ_G0020750
protein coding gene Chr15:22363131-22414680 (-)
SPRET/EiJ MGP_SPRETEiJ_G0020588
protein coding gene Chr15:22938438-22991150 (-)
WSB/EiJ MGP_WSBEiJ_G0021063
protein coding gene Chr15:23146998-23200284 (-)



Homology
more
  • Human Ortholog
    BASP1, brain abundant membrane attached signal protein 1
  • Vertebrate Orthologs
    7
  • Human Ortholog
    BASP1, brain abundant membrane attached signal protein 1
    Orthology source: HGNC, HomoloGene
  • Synonyms
    CAP23, CAP-23, NAP22, NAP-22
  • Links
    NCBI Gene ID: 10409
    neXtProt AC: NX_P80723
    UniProt: P80723

  • Chr Location
    5p15.1; chr5:17216823-17276845 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    13 phenotypes from 2 alleles in 1 genetic background
    1 images
    14 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a null allele exhibit postnatal lethality, hyperactivity, decreased body weight, and defects in neurite axon outgrowth, Schwann cell morphology, and brain ventricle size.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 70350 NCBI Gene Model | MGI Sequence Detail 50488 C57BL/6J ±  kb
    transcript NM_027395 RefSeq | MGI Sequence Detail 1855 C57BL/6  
    polypeptide Q91XV3 UniProt | EBI | MGI Sequence Detail 226 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 110
      cDNA 109
      Other 1

      Microarray probesets 6
    Other
    Accession IDs
    less
    MGI:1929858
    References
    more
    • Summaries
      All 45
      Developmental Gene Expression 4
      Gene Ontology 6
      Phenotypes 14
    • Earliest
      J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
    • Latest
      J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    12/04/2018
    MGI 6.13
    The Jackson Laboratory