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Basp1
Gene Detail
Symbol

Name
ID
Basp1
brain abundant, membrane attached signal protein 1
MGI:1917600
Synonyms
2610024P12Rik, CAP23, CAP-23, Ckap3
Feature Type
protein coding gene
Genetic Map
Chromosome 15
9.16 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr15:25363285-25413764 bp, - strand
From Ensembl annotation of GRCm38

  50480 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:38168  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

HCOP human homology predictions: BASP1
Gene Tree: Basp1

Human
homologs
BASP1, brain abundant, membrane attached signal protein 1
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 10409
neXtProt AC: NX_P80723

Human Synonyms: CAP23, CAP-23, NAP22, NAP-22

Human Chr (Location): 5p15.1; chr5:17216823-17276845 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(124) : Gene trapped(119) Targeted(5)
Incidental mutations (data from Mutagenetix , APF , CvDC )
 
Mice homozygous for a null allele exhibit postnatal lethality, hyperactivity, decreased body weight, and defects in neurite axon outgrowth, Schwann cell morphology, and brain ventricle size.
 
Phenotype Images(1)
Interactions
Basp1 interacts with 217 markers (Mir1b, Mir7-1, Mir7-2, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (4 records)
Data Summary: Results (28)    Tissues (26)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 28
cDNA source data(109)
Other mouse links: GENSAT   GEO   Expression Atlas
Other vertebrate links: Xenbase basp1    NEW 
Molecular
reagents
All nucleic(110) cDNA(109) Other(1)
Microarray probesets(6)
Other database
links
Ensembl Gene Model ENSMUSG00000045763 (Evidence)
Entrez Gene 70350 (Evidence)
UniGene 29586
DFCI TC1668629, TC1694667
DoTS DT.536191
NIA Mouse Gene Index U036041
Consensus CDS Project CCDS27398.1
International Mouse Phenotyping Consortium Status Basp1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000045763 Ensembl Gene Model | MGI Sequence Detail 50480 C57BL/6J ±  kb
transcript ENSMUST00000058845 Ensembl | MGI Sequence Detail 1847 Not Applicable 
polypeptide ENSMUSP00000053943 Ensembl | MGI Sequence Detail 226 Not Applicable 

For the selected sequences
All sequences(22) RefSeq(2) UniProt(1)
Polymorphisms
SNPs within 2kb(433 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR008408 Brain acid soluble protein 1
Protein Ontology PR:000004647 brain acid soluble protein 1
References
(Earliest) J:134790 Caroni P, et al., Intrinsic neuronal determinants locally regulate extrasynaptic and synaptic growth at the adult neuromuscular junction. J Cell Biol. 1997 Feb 10;136(3):679-92
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(41)
Other
accession IDs
MGI:1929858

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
06/30/2015
MGI 5.22
The Jackson Laboratory