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Rpf1 Gene Detail
Summary
  • Symbol
    Rpf1
  • Name
    ribosome production factor 1 homolog
  • Synonyms
    2210420E24Rik, 2310066N05Rik, Bxdc5
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917535
    NCBI Gene: 70285
Location & Maps
more
  • Sequence Map
    Chr3:146505956-146521429 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      15474 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 71.57 cM, cytoband H3
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    RPF1, ribosome production factor 1 homolog
  • Vertebrate Orthologs
    10
  • Human Ortholog
    RPF1, ribosome production factor 1 homolog
    Orthology source: HGNC, HomoloGene
  • Synonyms
    BXDC5
  • Links
    NCBI Gene ID: 80135
    neXtProt AC: NX_Q9H9Y2

  • Chr Location
    1p22.3; chr1:84479237-84498350 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
  • All Mutations and Alleles
    5
  • Gene trapped
    2
  • Radiation induced
    1
  • Targeted
    2
  • Genomic Mutations
    1 involving Rpf1
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000055332 VEGA Gene Model | MGI Sequence Detail 15474 C57BL/6J ±  kb
transcript OTTMUST00000136963 VEGA | MGI Sequence Detail 1661 Not Applicable  
polypeptide OTTMUSP00000072193 VEGA | MGI Sequence Detail 349 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    70 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 9
    cDNA 9

    Microarray probesets 6
Other
Accession IDs
less
MGI:1917396
References
more
  • Summaries
    All 25
    Developmental Gene Expression 2
    Gene Ontology 3
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:218172 Ha T, et al., CbGRiTS: cerebellar gene regulation in time and space. Dev Biol. 2015 Jan 1;397(1):18-30

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/17/2016
MGI 6.05
The Jackson Laboratory